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We study a method of seed-based lossless filtration for approximate string matching and related bioinformatics applications. The method is based on a simultaneous use of several spaced seeds rather than a single seed as studied by Burkhardt…

Quantitative Methods · Quantitative Biology 2011-01-18 Gregory Kucherov , Laurent Noé , Mikhail A. Roytberg

We study the computational complexity of determining whether a cellular automaton is sensitive to initial conditions. We show that this problem is $\Pi^0_2$-complete in dimension 1 and $\Sigma^0_3$-complete in dimension 2 and higher. This…

Dynamical Systems · Mathematics 2025-05-06 Tom Favereau , Ville Salo

Drug-target binding affinity prediction is a fundamental task for drug discovery. It has been extensively explored in literature and promising results are reported. However, in this paper, we demonstrate that the results may be misleading…

Machine Learning · Computer Science 2025-04-15 Chenbin Zhang , Zhiqiang Hu , Chuchu Jiang , Wen Chen , Jie Xu , Shaoting Zhang

Superpixel algorithms aim to over-segment the image by grouping pixels that belong to the same object. Many state-of-the-art superpixel algorithms rely on minimizing objective functions to enforce color ho- mogeneity. The optimization is…

Computer Vision and Pattern Recognition · Computer Science 2013-09-17 Michael Van den Bergh , Xavier Boix , Gemma Roig , Luc Van Gool

Fruit tree image segmentation is an essential problem in automating a variety of agricultural tasks such as phenotyping, harvesting, spraying, and pruning. Many research papers have proposed a diverse spectrum of solutions suitable to…

Computer Vision and Pattern Recognition · Computer Science 2024-12-20 Il-Seok Oh

Binary segmentation is the classic greedy algorithm which recursively splits a sequential data set by optimizing some loss or likelihood function. Binary segmentation is widely used for changepoint detection in data sets measured over space…

Machine Learning · Computer Science 2024-10-14 Toby Dylan Hocking

The measurement of the efficiency of an event selection is always an important part of the analysis of experimental data. The statistical techniques which are needed to determine the efficiency and its uncertainty are reviewed. Frequentist…

Data Analysis, Statistics and Probability · Physics 2012-08-28 Diego Casadei

We introduce heap automata, a formalism for automatic reasoning about robustness properties of the symbolic heap fragment of separation logic with user-defined inductive predicates. Robustness properties, such as satisfiability,…

Logic in Computer Science · Computer Science 2016-10-25 Christina Jansen , Jens Katelaan , Christoph Matheja , Thomas Noll , Florian Zuleger

Sensitivity analysis measures the influence of a Bayesian network's parameters on a quantity of interest defined by the network, such as the probability of a variable taking a specific value. In particular, the so-called sensitivity value…

Artificial Intelligence · Computer Science 2022-06-20 Rafael Ballester-Ripoll , Manuele Leonelli

We study the task of selecting $k$ nodes, in a social network of size $n$, to seed a diffusion with maximum expected spread size, under the independent cascade model with cascade probability $p$. Most of the previous work on this problem…

Social and Information Networks · Computer Science 2022-05-24 Dean Eckles , Hossein Esfandiari , Elchanan Mossel , M. Amin Rahimian

Many vision tasks use secondary information at inference time -- a seed -- to assist a computer vision model in solving a problem. For example, an initial bounding box is needed to initialize visual object tracking. To date, all such work…

Computer Vision and Pattern Recognition · Computer Science 2021-09-06 Stephan J. Lemmer , Jason J. Corso

Reachability analysis is at the core of many applications, from neural network verification, to safe trajectory planning of uncertain systems. However, this problem is notoriously challenging, and current approaches tend to be either too…

Systems and Control · Electrical Eng. & Systems 2020-11-10 Thomas Lew , Marco Pavone

Many engineering systems are subject to spatially distributed uncertainty, i.e. uncertainty that can be modeled as a random field. Altering the mean or covariance of this uncertainty will in general change the statistical distribution of…

Optimization and Control · Mathematics 2014-07-09 Eric Dow , Qiqi Wang

Tree ensembles, such as random forests and boosted trees, are renowned for their high prediction performance. However, their interpretability is critically limited due to the enormous complexity. In this study, we present a method to make a…

Machine Learning · Statistics 2017-03-01 Satoshi Hara , Kohei Hayashi

The present work provides an application of Global Sensitivity Analysis to supervised machine learning methods such as Random Forests. These methods act as black boxes, selecting features in high--dimensional data sets as to provide…

Machine Learning · Statistics 2024-07-22 Giulia Vannucci , Roberta Siciliano , Andrea Saltelli

With the need to feed a growing world population, the efficiency of crop production is of paramount importance. To support breeding and field management, various characteristics of the plant phenotype need to be measured -- a time-consuming…

Deep Neural Networks (DNNs) have recently shown state of the art performance on semantic segmentation tasks, however, they still suffer from problems of poor boundary localization and spatial fragmented predictions. The difficulties lie in…

Computer Vision and Pattern Recognition · Computer Science 2018-10-29 Peng Jiang , Fanglin Gu , Yunhai Wang , Changhe Tu , Baoquan Chen

Computational feasibility is a widespread concern that guides the framing and modeling of biological and artificial intelligence. The specification of cognitive system capacities is often shaped by unexamined intuitive assumptions about the…

Artificial Intelligence · Computer Science 2022-05-12 Federico Adolfi , Todd Wareham , Iris van Rooij

The production of thematic maps depicting land cover is one of the most common applications of remote sensing. To this end, several semantic segmentation approaches, based on deep learning, have been proposed in the literature, but land…

Computer Vision and Pattern Recognition · Computer Science 2018-05-30 Guillem Pascual , Santi Seguí , Jordi Vitrià

In any given machine learning problem, there may be many models that could explain the data almost equally well. However, most learning algorithms return only one of these models, leaving practitioners with no practical way to explore…

Machine Learning · Computer Science 2022-10-27 Rui Xin , Chudi Zhong , Zhi Chen , Takuya Takagi , Margo Seltzer , Cynthia Rudin
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