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RKappa is a framework for the development, simulation and analysis of rule-base models within the mature statistically empowered R environment. It is designed for model editing, parameter identification, simulation, sensitivity analysis and…

Quantitative Methods · Quantitative Biology 2018-09-24 Anatoly Sorokin , Oksana Sorokina , J. Douglas Armstrong

Current Large Language Models (LLMs) exhibit limited ability to understand table structures and to apply precise numerical reasoning, which is crucial for tasks such as table question answering (TQA) and table-based fact verification (TFV).…

Computation and Language · Computer Science 2025-07-11 Xinyuan Lu , Liangming Pan , Yubo Ma , Preslav Nakov , Min-Yen Kan

The relatively recent adoption of Knowledge Graphs as an enabling technology in multiple high-profile artificial intelligence and cognitive applications has led to growing interest in the Semantic Web technology stack. Many…

Artificial Intelligence · Computer Science 2018-06-05 Paul Cuddihy , Justin McHugh , Jenny Weisenberg Williams , Varish Mulwad , Kareem S. Aggour

We present ROBOTO2, an open-source, web-based platform for large language model (LLM)-assisted risk of bias (ROB) assessment of clinical trials. ROBOTO2 streamlines the traditionally labor-intensive ROB v2 (ROB2) annotation process via an…

Computation and Language · Computer Science 2025-11-06 Anthony Hevia , Sanjana Chintalapati , Veronica Ka Wai Lai , Thanh Tam Nguyen , Wai-Tat Wong , Terry Klassen , Lucy Lu Wang

This document contains the mathematical introduction to RORPack - a Python software library for robust output tracking and disturbance rejection for linear PDE systems. The RORPack library is open-source and freely available at…

Optimization and Control · Mathematics 2019-02-27 Lassi Paunonen

Programming a robotic is a complex task, as it demands the user to have a good command of specific programming languages and awareness of the robot's physical constraints. We propose a framework that simplifies robot deployment by allowing…

Human-Computer Interaction · Computer Science 2024-07-18 Cathy Mengying Fang , Krzysztof Zieliński , Pattie Maes , Joe Paradiso , Bruce Blumberg , Mikkel Baun Kjærgaard

The rapid evolution of cyber threats necessitates innovative solutions for detecting and analyzing malicious activity. Honeypots, which are decoy systems designed to lure and interact with attackers, have emerged as a critical component in…

Cryptography and Security · Computer Science 2024-11-05 Hakan T. Otal , M. Abdullah Canbaz

In collaborative open-source development, the rationale for code changes is often captured in commit messages, making them a rich source of valuable information. However, research on rationale in commit messages remains limited. In this…

Software Engineering · Computer Science 2025-06-16 Mouna Dhaouadi , Bentley James Oakes , Michalis Famelis

We introduce Rabbit, a combinator-based query language. Rabbit is designed to let data analysts and other accidental programmers query complex structured data. We combine the functional data model and the categorical semantics of…

Databases · Computer Science 2017-02-28 Clark C. Evans , Kyrylo Simonov

Summary: Ancestral recombination graphs (ARGs) are a complete representation of the genetic relationships between recombining lineages and are of central importance in population genetics. Recent breakthroughs in simulation and inference…

Populations and Evolution · Quantitative Biology 2025-08-07 James Kitchens , Yan Wong

Making a good graphic that accurately and efficiently conveys the desired message to the audience is both an art and a science, typically not taught in the data science curriculum. Visualisation makeovers are exercises where the community…

Human-Computer Interaction · Computer Science 2025-08-11 Siddharth Gangwar , David A. Selby , Sebastian J. Vollmer

For over 15 years, the mlpack machine learning library has served as a "swiss army knife" for C++-based machine learning. Its efficient implementations of common and cutting-edge machine learning algorithms have been used in a wide variety…

Coreference Resolution (CR) is a crucial yet challenging task in natural language understanding, often constrained by task-specific architectures and encoder-based language models that demand extensive training and lack adaptability. This…

Computation and Language · Computer Science 2025-09-23 Tuğba Pamay Arslan , Emircan Erol , Gülşen Eryiğit

We present the VASPKIT, a command-line program that aims at providing a powerful and user-friendly interface to perform high-throughput analysis of a variety of material properties from the raw data produced by the VASP code. It consists of…

Materials Science · Physics 2021-06-03 Vei Wang , Nan Xu , Jin Cheng Liu , Gang Tang , Wen-Tong Geng

We introduce Tilt Map, a novel interaction technique for intuitively transitioning between 2D and 3D map visualisations in immersive environments. Our focus is visualising data associated with areal features on maps, for example, population…

Human-Computer Interaction · Computer Science 2020-06-26 Yalong Yang , Tim Dwyer , Kim Marriott , Bernhard Jenny , Sarah Goodwin

This is the user manual for CosmoLattice, a modern package for lattice simulations of the dynamics of interacting scalar and gauge fields in an expanding universe. CosmoLattice incorporates a series of features that makes it very versatile…

Cosmology and Nongalactic Astrophysics · Physics 2022-11-09 Daniel G. Figueroa , Adrien Florio , Francisco Torrenti , Wessel Valkenburg

Navigating healthcare systems can be complex and overwhelming, creating barriers for patients seeking timely and appropriate medical attention. In this paper, we introduce C-PATH (Conversational Patient Assistance and Triage in Healthcare),…

Computation and Language · Computer Science 2025-06-10 Qi Shi , Qiwei Han , Cláudia Soares

MathLink is Wolfram Research's protocol for communicating with the Mathematica Kernel and is used extensively in their own Notebook Frontends. The Mathematica Book insinuates that linking C programs with MathLink is straightforward but in…

Computational Physics · Physics 2015-05-28 T. Hahn

We present ControlLLM, a novel framework that enables large language models (LLMs) to utilize multi-modal tools for solving complex real-world tasks. Despite the remarkable performance of LLMs, they still struggle with tool invocation due…

Computer Vision and Pattern Recognition · Computer Science 2023-12-19 Zhaoyang Liu , Zeqiang Lai , Zhangwei Gao , Erfei Cui , Ziheng Li , Xizhou Zhu , Lewei Lu , Qifeng Chen , Yu Qiao , Jifeng Dai , Wenhai Wang

Misconceptions about program execution hinder many novice programmers. We introduce SimpliPy, a notional machine designed around a carefully chosen Python subset to clarify core control flow and scoping concepts. Its foundation is a precise…

Programming Languages · Computer Science 2025-10-21 Moida Praneeth Jain , Venkatesh Choppella