Related papers: The Building of BODHI, a Bio-diversity Database Sy…
As high-dimensional vector data increasingly surpasses the processing capabilities of traditional database management systems, Vector Databases (VDBs) have emerged and become tightly integrated with large language models, being widely…
Polyploidization, whereby an organism inherits multiple copies of the genome of their parents, is an important evolutionary event that has been observed in plants and animals. One way to study such events is in terms of the ploidy number of…
AsterixDB is a new, full-function BDMS (Big Data Management System) with a feature set that distinguishes it from other platforms in today's open source Big Data ecosystem. Its features make it well-suited to applications like web data…
A primary motivation for our research in digital ecosystems is the desire to exploit the self-organising properties of biological ecosystems. Ecosystems are thought to be robust, scalable architectures that can automatically solve complex,…
We propose a novel framework to facilitate the on-demand design of data-centric systems by exploiting domain knowledge from an existing ontology. Its key ingredient is a process that we call focusing, which allows to obtain a schema for a…
Mining software repositories is a useful technique for researchers and practitioners to see what software developers actually do when developing software. Tools like Boa provide users with the ability to easily mine these open-source…
The rapid advancement of AI technology has led to widespread applications of agent systems across various domains. However, the need for detailed architecture design poses significant challenges in designing and operating these systems.…
We make a case for "planetary computing" -- infrastructure to handle the ingestion, transformation, analysis and publication of global data products for furthering environmental science and enabling better informed policy-making. We draw on…
The predictive ability of database classifiers constructed with a network of interacting chemical oscillators is studied. Databases considered here are composed of records, where each record contains a number of parameters (predictors)…
To tackle the challenge of producing tractable phylogenetic trees in contexts where complete information is available, we introduce APOGeT: an online, pluggable, clustering algorithm for a stream of genomes. It is designed to run alongside…
Background: Genomic data have been collected by different institutions and companies and need to be shared for broader use. In a cross-site genomic data sharing system, a secure and transparent access control audit module plays an essential…
We present a new open-source, GUI-based application created using Plotly-Dash, along with an integrated PostgreSQL-based relational database, developed to streamline EnergyPlus building model simulation workflows. The application…
We introduce Platform for Situated Intelligence, an open-source framework created to support the rapid development and study of multimodal, integrative-AI systems. The framework provides infrastructure for sensing, fusing, and making…
The interfacial structures and interactions of two-dimensional (2D) materials on solid substrates are of fundamental importance for the fabrication and application of 2D materials. However, selection of a suitable solid substrate to grow 2D…
Most distributed storage systems provide limited abilities for querying data by attributes other than their primary keys. Supporting efficient search on secondary attributes is challenging as applications pose varying requirements to query…
Plant breeding programs use data obtained from multi-environment selection experiments to produce improved varieties with the ultimate aim of maintaining high levels of genetic gain. Selection accuracy can be improved with the use of…
A key challenge in modern computing is to develop systems that address complex, dynamic problems in a scalable and efficient way, because the increasing complexity of software makes designing and maintaining efficient and flexible systems…
Data-driven analysis is important in virtually every modern organization. Yet, most data is underutilized because it remains locked in silos inside of organizations; large organizations have thousands of databases, and billions of files…
Data organization is a difficult and essential component in cultural heritage applications. Over the years, a great amount of archaeological ceramic data have been created and processed by various methods and devices. Such ceramic data are…
During research, domain experts often ask analytical questions whose answers require integrating data from a wide range of web sources. Thus, they must spend substantial effort searching, extracting, and organizing raw data before analysis…