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We study the one dimensional three species monomer-monomer reaction model in the reaction controlled limit using mean-field theory and dynamic Monte Carlo simulations. The phase diagram consists of a reactive steady state bordered by three…

Statistical Mechanics · Physics 2009-10-31 Kevin E. Bassler , Dana A. Browne

The reversible reactions like A+B <-> C in the many-component diffusive system affect the diffusive properties of the constituents. The effective conjugation of irreversible processes of different dimensionality takes place due to the…

Other Condensed Matter · Physics 2007-05-23 Serge Shpyrko , Vladimir M. Sysoev

In recent years considerable portion of the computer science community has focused its attention on understanding living cell biochemistry and efforts to understand such complication reaction environment have spread over wide front, ranging…

Computational Engineering, Finance, and Science · Computer Science 2009-11-13 Zoran Konkoli

We present a general expression for the association rate for partially diffusion-controlled reactions between spherical molecules with an asymmetric reactive patch on each surface. Reaction can occur only if the two patches are in contact…

Chemical Physics · Physics 2007-05-23 Maximilian Schlosshauer , David Baker

This article gives an overview of the developments in controlled diffusion processes, emphasizing key results regarding existence of optimal controls and their characterization via dynamic programming for a variety of cost criteria and…

Probability · Mathematics 2007-05-23 Vivek S. Borkar

In this paper, we investigate how stochastic reaction processes are affected by external perturbations. We describe an extension of the deterministic metabolic control analysis (MCA) to the stochastic regime. We introduce stochastic…

Quantitative Methods · Quantitative Biology 2009-08-21 Kyung Hyuk Kim , Herbert M. Sauro

Star polymers are within the most topologically entangled macromolecules. For a star to move the current theory is that one arm must retract to the branch point. The probability of this event falls exponentially with molecular weight, and a…

Computational Physics · Physics 2018-09-14 Airidas Korolkovas

The aim of this paper is to investigate the use of Pyragas control on the stability of stationary, localised coherent structures in a general class of two-component, singularly perturbed, reaction-diffusion systems. We use noninvasive…

Dynamical Systems · Mathematics 2023-08-07 Frits Veerman , Isabelle Schneider

We consider the reaction zone that grows between separated regions of diffusing species $A$ and $B$ that react according to $mA+nB\to 0$, within the framework of the mean-fieldlike reaction-diffusion equations. For distances from the centre…

Condensed Matter · Physics 2009-10-22 Stephen Cornell , Zbigniew Koza , Michel Droz

We consider a family of controlled reaction-diffusion equations, describing the spatial spreading of an invasive biological species. For a given propagation speed $c\in{I\!\!R}$, we seek a control with minimum cost, which achieves a…

Optimization and Control · Mathematics 2023-02-21 Alberto Bressan , Minyan Zhang

We compare spot patterns generated by Turing mechanisms with those generated by replication cascades, in a model one-dimensional reaction-diffusion system. We determine the stability region of spot solutions in parameter space as a function…

Pattern Formation and Solitons · Physics 2014-03-05 Michael Stich , Gourab Ghoshal , Juan Pérez-Mercader

We consider the properties of the diffusion controlled reaction A+B->0 in the steady state, where fixed currents of A and B particles are maintained at opposite edges of the system. Using renormalisation group methods, we explicitly…

Condensed Matter · Physics 2009-10-28 Martin Howard , John Cardy

The scaling form of the whole distribution P(D) of the random diffusion coefficient D(x) in a model of classically diffusing particles is investigated. The renormalization group approach above the lower critical dimension d=0 is applied to…

Condensed Matter · Physics 2009-10-22 Yan-Chr Tsai , Yonathan Shapir

We present a multiscale approach to model diffusion in a crowded environment and its effect on the reaction rates. Diffusion in biological systems is often modeled by a discrete space jump process in order to capture the inherent noise of…

Subcellular Processes · Quantitative Biology 2016-03-18 Lina Meinecke

Nuclear reactions govern major aspects of the chemical evolution od galaxies and stars. Analytic study of the reaction rates and reaction probability integrals is attempted here. Exact expressions for the reaction rates and reaction…

Astrophysics · Physics 2011-04-15 H. J. Haubold , A. M. Mathai

The primary goal of this paper is to characterize solutions to coupled reaction-diffusion systems. Indeed, we use operators theory to show that under suitable assumptions, then the solutions to the reaction-diffusion equations exist. As…

Analysis of PDEs · Mathematics 2007-05-23 Toka Diagana

We present a method to control the two-dimensional shape of traveling wave solutions to reaction-diffusion systems, as e.g. interfaces and excitation pulses. Control signals that realize a pre-given wave shape are determined analytically…

Pattern Formation and Solitons · Physics 2014-12-15 Jakob Löber , Steffen Martens , Harald Engel

Precipitation patterns generated by A^{+}+B^{-} --> C type reaction-diffusion processes are studied. It is shown both theoretically and experimentally that the patterns can be controlled by an appropriately designed, time-dependent electric…

Other Condensed Matter · Physics 2008-11-13 Ioana Bena , Michel Droz , Istvan Lagzi , Kirsten Martens , Zoltan Racz , Andras Volford

This paper is devoted to investigating non-equilibrium phase transitions to an absorbing state, which are generically encountered in reaction-diffusion processes. It is a review, based on [Phys. Rev. Lett. 92, 195703; Phys. Rev. Lett. 92,…

Statistical Mechanics · Physics 2009-11-11 Léonie Canet

We explore the impact of the short range interaction on the scattering of ground state polar molecules, and study the transition from a weak to strong dipolar scattering over an experimentally reasonable range of energies and electric field…

Atomic Physics · Physics 2009-11-13 Christopher Ticknor