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Related papers: Supersymmetry Theory of Disordered Heteropolymers

200 papers

The effective equation of motion that describes the different monomer alternation along the heteropolymer chain is proposed. On this basis the supersymmetry field scheme is built up to analyze memory and ergodicity breaking effects.

Statistical Mechanics · Physics 2009-10-31 Alexander I. Olemskoi

Mesoscopic structure of the periodically alternating layers of stretched homopolymer chains surrounded by perpendicularly oriented oligomeric tails is studied for the systems with both strong (ionic) and weak (hydrogen) interactions. We…

Soft Condensed Matter · Physics 2009-11-10 A. I. Olemskoi , I. Krakovsky , A. Savelyev

The supersymmetry self-consistent approximation for the model of non-equilibrium thermodynamic system with quenched disorder is derived from the dynamical action calculated by means of generalized second Legendre transformation. The…

Statistical Mechanics · Physics 2009-10-31 Alexei Kiselev

In this paper, we study the role of surface of the globule and the role of interactions with the solvent for designed sequence heteropolymers using random energy model (REM). We investigate the ground state energy and surface monomer…

Soft Condensed Matter · Physics 2007-05-23 Longhua Hu , Alexander Y. Grosberg

It is widely held that the Random Energy Model (REM) describes the freezing transition of a variety of types of heteropolymers. We demonstrate that the hallmark property of REM, statistical independence of the energies of states over…

Condensed Matter · Physics 2009-10-28 Vijay S. Pande , Alexander Yu. Grosberg , Chris Joerg , Toyoichi Tanaka

We investigate the dynamics of a particle moving randomly along a disordered hetero-polymer subjected to rapid conformational changes which induce superdiffusive motion in chemical coordinates. We study the antagonistic interplay between…

Statistical Mechanics · Physics 2009-11-10 D. Brockmann , T. Geisel

We study the conformational properties of heteropolymers containing two types of monomers A and B, modeled as self-avoiding random walks on a regular lattice. Such a model can describe in particular the sequences of hydrophobic and…

Disordered Systems and Neural Networks · Physics 2014-09-01 Viktoria Blavatska , Wolfhard Janke

We study the impact of mutations (changes in amino acid sequence) on the thermodynamics of simple protein-like heteropolymers consisting of N monomers, representing the amino acid sequence. The sequence is designed to fold into its native…

Condensed Matter · Physics 2009-10-30 G. Tiana , R. A. Broglia , H. E. Roman , E. Vigezzi , E. Shakhnovich

Dynamical supersymmetry breaking is considered in models which admit descriptions in terms of electric, confined, or magnetic degrees of freedom in various limits. In this way, a variety of seemingly different theories which break…

High Energy Physics - Theory · Physics 2007-05-23 Kenneth Intriligator , Scott Thomas

Symmetry underpins our understanding of physical law. Open systems, those in contact with their environment, can provide a platform to explore parity-time symmetry. While classical parity-time symmetric systems have received a lot of…

Mesoscale and Nanoscale Physics · Physics 2021-12-09 C. A. Downing , V. A. Saroka

Microphase separated structure consisting of the periodic alternation of the layers of stretched homopolymer chains surrounded by perpendicularly oriented oligomeric tails is studied for both, strongly bonded (ionic) systems and weakly…

Statistical Mechanics · Physics 2007-05-23 A. Olemskoi , I. Krakovsky , A. Savelyev

We apply the computational methodology of phase retrieval to the problem of folding heteropolymers. The ground state fold of the polymer is defined by the intersection of two sets in the configuration space of its constituent monomers: a…

Biomolecules · Quantitative Biology 2013-05-29 Veit Elser , Ivan Rankenburg

We develop several non-perturbative approximations for studying the dynamics of a supersymmetric O(N) model which preserve supersymmetry. We study the phase structure of the vacuum in both the leading order in large-N approximation as well…

High Energy Physics - Phenomenology · Physics 2009-11-11 John F. Dawson , Bogdan Mihaila , Per Berglund , Fred Cooper

We present a pedagogical introduction to supersymmetry and supersymmetric models and give an overview of the potential of the linear collider for studying them. If supersymmetry is found, its discovery will bring with it many more questions…

High Energy Physics - Phenomenology · Physics 2007-05-23 Jonathan L. Feng , Mihoko M. Nojiri

Conformations of a single semiflexible polymer chain dissolved in a low molecular weight liquid crystalline solvents (nematogens) are examined by using a mean field theory. We takes into account a stiffness and partial orientational…

Soft Condensed Matter · Physics 2009-11-07 Akihiko Matsuyama

We present a field-theory description of ultracold bosonic atoms in presence of a disordered external potential. By means of functional integration techniques, we aim to investigate and review the interplay between disordered energy…

Quantum Gases · Physics 2019-06-18 Alberto Cappellaro , Luca Salasnich

We propose and compare different strategies to construct dynamic density functional theories (DDFTs) for inhomogeneous polymer systems close to equilibrium from microscopic simulation trajectories. We focus on the systematic construction of…

Soft Condensed Matter · Physics 2020-09-29 Sriteja Mantha , Shuanhu Qi , Friederike Schmid

We consider a lattice model of a semiflexible homopolymer chain in a bad solvent. Beside the temperature $T$, this model is described by (i) a curvature energy $\varepsilon_h$, representing the stiffness of the chain (ii) a…

Condensed Matter · Physics 2009-10-28 S. Doniach , T. Garel , H. Orland

We study the influence of some quenched disorder in the sequence of monomers on the entropic elasticity of long polymeric chains. Starting from the Kratky-Porod model, we show numerically that some randomness in the favoured angles between…

Statistical Mechanics · Physics 2009-10-30 D. Bensimon , D. Dohmi , M. Mezard

The experimental potential of e+e- Linear Colliders to explore the properties of supersymmetric particles is reviewed. High precision measurements of masses, spin-parity, gauge quantum numbers, couplings and mixings, production and decay…

High Energy Physics - Phenomenology · Physics 2007-05-23 Hans-Ulrich Martyn
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