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An abstract framework is developed that enables the analysis of algebraically stabilized discretizations in a unified way. This framework is applied to a discretization of this kind for convection-diffusion-reaction equations. The…

Numerical Analysis · Mathematics 2021-11-17 Volker John , Petr Knobloch

This paper presents an improved immersed moving boundary model (IBM) for solving complex fluid-particle interactions in a coupled lattice Boltzmann method (LBM) and an adhesive discrete element method (DEM), using the "partially saturated…

Soft Condensed Matter · Physics 2020-10-21 Wenwei Liu , Chuan-Yu Wu

We propose an efficient algorithm for the approximation of fractional integrals by using Runge--Kutta based convolution quadrature. The algorithm is based on a novel integral representation of the convolution weights and a special…

Numerical Analysis · Mathematics 2019-07-29 Lehel Banjai , María López-Fernández

We present the spatial regime conversion method (SRCM), a novel hybrid modelling framework for simulating reaction-diffusion systems that adaptively combines stochastic discrete and deterministic continuum representations. Extending the…

Quantitative Methods · Quantitative Biology 2025-07-08 Charles G. Cameron , Cameron A. Smith , Christian A. Yates

A mesoscopic multi-particle collision model for fluid dynamics is generalized to incorporate the chemical reactions among species that may diffuse at different rates. This generalization provides a means to simulate reaction-diffusion…

Chemical Physics · Physics 2016-09-08 K. Tucci , R. Kapral

In a recent paper (see [7]), a quasi-nonlocal coupling method was introduced to seamlessly bridge a nonlocal diffusion model with the classical local diffusion counterpart in a one-dimensional space. The proposed coupling framework removes…

Numerical Analysis · Mathematics 2021-05-04 Amanda Gute , Xingjie Helen Li

In this work, we extend the Equilibrium Propagation framework to skew-gradient systems and show an equivalence between deep Energy-Based Models and Hamiltonian neural networks. We focus on networks of diffusively coupled Fitzhugh-Nagumo…

Machine Learning · Computer Science 2026-05-22 Jack Kendall

A general high-order fully explicit scheme based on projective integration methods is here presented to solve systems of degenerate parabolic equations in general dimensions. The method is based on a BGK approximation of the…

Numerical Analysis · Mathematics 2025-03-10 Tommaso Tenna

We show that propagation speeds in invasion processes modeled by reaction-diffusion systems are determined by marginal spectral stability conditions, as predicted by the marginal stability conjecture. This conjecture was recently settled in…

Analysis of PDEs · Mathematics 2023-10-24 Montie Avery

A gradient discretisation method (GDM), Gradient schemes, Convergence analysis, Existence of weak solutions, Anisotropic reaction diffusion models, Dirichlet and Neumann boundary conditions, Non conforming finite element methods, Finite…

Numerical Analysis · Mathematics 2020-09-02 Yahya Alnashri , Hasan Alzubaidi

In this work, we present an extensive computational study on the Ziff-Gulari-Barshad (ZGB) model extended in order to include the spatial diffusion of oxygen atoms and carbon monoxide molecules, both adsorbed on the surface. In our…

Statistical Mechanics · Physics 2018-08-01 Roberto da Silva , Henrique Almeida Fernandes

We consider a reaction-diffusion system where some components react and diffuse on the boundary of a region, while other components diffuse in the interior and react with those on the boundary through mass transport. We establish local…

Analysis of PDEs · Mathematics 2015-11-20 Vandana Sharma , Jeff Morgan

This paper is devoted to the analysis of a numerical scheme for the coagulation and fragmentation equation with diffusion in space. A finite volume scheme is developed, based on a conservative formulation of the space nonhomogeneous…

Numerical Analysis · Mathematics 2009-11-13 Francis Filbet

A method for classifying $n$-species reaction-diffusion models, admitting shock solutions is presented. The most general one-dimensional two-species reaction-diffusion model with nearest neighbor interactions admitting uniform product…

Statistical Mechanics · Physics 2011-01-04 S. Masoomeh Hashemi , Amir Aghamohammadi

Many applications involve partial differential equations which admits nontrivial steady state solutions. The design of schemes which are able to describe correctly these equilibrium states may be challenging for numerical methods, in…

Analysis of PDEs · Mathematics 2016-02-09 Lorenzo Pareschi , Thomas Rey

Being an example for a relaxation oscillator, the FitzHugh-Nagumo model has been widely employed for describing the generation of action potentials. In this paper, we begin with a biological interpretation of what the subsequent…

Numerical Analysis · Mathematics 2025-01-31 Burcu Gürbüz , Aytül Gökçe , Mahmut Modanlı

Semiclassical approximations for quantum dynamic simulations in complex chemical systems range from rigorously accurate methods that are computationally expensive to methods that exhibit near-classical scaling with system size but are…

Chemical Physics · Physics 2022-09-09 Shreyas Malpathak , Matthew S. Church , Nandini Ananth

In this work, we derive particle schemes, based on micro-macro decomposition, for linear kinetic equations in the diffusion limit. Due to the particle approximation of the micro part, a splitting between the transport and the collision part…

Numerical Analysis · Mathematics 2017-01-19 Anaïs Crestetto , Nicolas Crouseilles , Mohammed Lemou

The recent development of the lattice gas automata method and its extension to the lattice Boltzmann method have provided new computational schemes for solving a variety of partial differential equations and modeling chemically reacting…

comp-gas · Physics 2008-02-03 S. Chen , S. P. Dawson , G. D. Doolen , D. R. Janecky , A. Lawniczak

In this paper we present a difference algebraic technique for the evaluation of the Einstein's strength of a system of partial difference equations and apply this technique to the comparative analysis of difference schemes for chemical…

Analysis of PDEs · Mathematics 2018-03-13 Alexander Evgrafov , Alexander Levin