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Species sharing a habitat will co-evolve to make use of the available resources, as consumption is modulated by competition and negative feedback loops between consumers and resources. The dietary range of a given species determines the…

Populations and Evolution · Quantitative Biology 2026-05-28 Elliot M. Butterworth , Tim Rogers

We show that the Tangled Nature model can be interpreted as a general formulation of the quasi-species model by Eigen et al. in a frequency dependent fitness landscape. We present a detailed theoretical derivation of the mutation threshold,…

Statistical Mechanics · Physics 2009-11-07 Simone Avogadro di Collobiano , Kim Christensen , Henrik Jeldtoft Jensen

There is now experimental evidence that nearest-neighbour interactions in flocks of birds are metric free, i.e. they have no characteristic interaction length scale. However, models that involve interactions between neighbours that are…

Quantitative Methods · Quantitative Biology 2015-06-22 Daniel J. G. Pearce , Matthew S. Turner

Adaptive landscape has been a fundamental concept in many branches of modern biology since Wright's first proposition in 1932. Meanwhile, the general existence of landscape remains controversial. The causes include the mixed uses of…

Populations and Evolution · Quantitative Biology 2015-12-10 Song Xu , Xinan Wang , Shuyun Jiao

We considered a {multi-block} molecular model of biological evolution, in which fitness is a function of the mean types of alleles located at different parts (blocks) of the genome. We formulated an infinite population model with selection…

Populations and Evolution · Quantitative Biology 2015-06-12 David B. Saakian , Zara Kirakosyan , Chin-Kun Hu

We show that evolutionarily stable states in general (nonlinear) population games (which can be viewed as continuous vector fields constrained on a polytope) are asymptotically stable under a multiplicative weights dynamic (under…

Computer Science and Game Theory · Computer Science 2016-02-02 Ioannis Avramopoulos

Growing efforts to measure fitness landscapes in molecular and microbial systems are premised on a tight relationship between landscape topography and evolutionary trajectories. This relationship, however, is far from being straightforward:…

Populations and Evolution · Quantitative Biology 2019-12-13 Matteo Smerlak

We study the effects of inhomogeneities on the evolution of the Universe, by considering a range of cosmological models with discretized matter content. This is done using exact and fully relativistic methods that exploit the symmetries in…

General Relativity and Quantum Cosmology · Physics 2015-06-17 Timothy Clifton , Daniele Gregoris , Kjell Rosquist , Reza Tavakol

We study the evolution of the population genealogy in the classic neutral Moran Model of finite size and in discrete time. The stochastic transformations that shape a Moran population can be realized directly on its genealogy and give rise…

Populations and Evolution · Quantitative Biology 2019-02-08 Johannes Wirtz , Thomas Wiehe

Recent developments of eco-evolutionary models have shown that evolving feedbacks between behavioral strategies and the environment of game interactions, leading to changes in the underlying payoff matrix, can impact the underlying…

Physics and Society · Physics 2024-06-10 Katherine Betz , Feng Fu , Naoki Masuda

In this paper we explore the eco-evolutionary dynamics of a predator-prey model, where the prey population is structured according to a certain life history trait. The trait distribution within the prey population is the result of interplay…

Populations and Evolution · Quantitative Biology 2019-03-27 József Z. Farkas , A. Yu. Morozov

In this paper we consider a microscopic model of a simple ecosystem. The basic ingredients of this model are individuals, and both the phenotypic and genotypic levels are taken in account. The model is based on a long range cellular…

Statistical Mechanics · Physics 2007-05-23 Franco Bagnoli , Michele Bezzi

The study of population dynamics originated with early sociological works but has since extended into many fields, including biology, epidemiology, evolutionary game theory, and economics. Most studies on population dynamics focus on the…

Machine Learning · Computer Science 2024-06-07 Noah Golowich , Elad Hazan , Zhou Lu , Dhruv Rohatgi , Y. Jennifer Sun

Experimental studies on enzyme evolution show that only a small fraction of all possible mutation trajectories are accessible to evolution. However, these experiments deal with individual enzymes and explore a tiny part of the fitness…

Populations and Evolution · Quantitative Biology 2015-05-30 Alexander E. Lobkovsky , Yuri I. Wolf , Eugene V. Koonin

We propose a stochastic model for evolution. Births and deaths of species occur with constant probabilities. Each new species is associated with a fitness sampled from the uniform distribution on [0,1]. Every time there is a death event…

Probability · Mathematics 2010-11-09 Herve Guiol , Fabio P. Machado , Rinaldo B. Schinazi

The genetic diversity of a species is shaped by its recent evolutionary history and can be used to infer demographic events or selective sweeps. Most inference methods are based on the null hypothesis that natural selection is a weak or…

Populations and Evolution · Quantitative Biology 2013-03-05 Richard A. Neher , Oskar Hallatschek

It has been hypothesized that in the era just before the last universal common ancestor emerged, life on earth was fundamentally collective. Ancient life forms shared their genetic material freely through massive horizontal gene transfer…

Populations and Evolution · Quantitative Biology 2015-11-18 Hinrich Arnoldt , Steven H. Strogatz , Marc Timme

It is well-known that population structure is a catalyst for the evolution of cooperation since individuals can reciprocate with their neighbors through local interactions defined by network structures. Previous research typically relies on…

Physics and Society · Physics 2021-12-16 Anzhi Sheng , Aming Li , Long Wang

Real-world optimisation problems are often dynamic. Previously good solutions must be updated or replaced due to changes in objectives and constraints. It is often claimed that evolutionary algorithms are particularly suitable for dynamic…

Neural and Evolutionary Computing · Computer Science 2016-07-13 Duc-Cuong Dang , Thomas Jansen , Per Kristian Lehre

We study the simple evolutionary process in which we repeatedly find the least fit agent in a population of agents and give it a new fitness which is chosen independently at random from a specified distribution. We show that many of the…

Adaptation and Self-Organizing Systems · Physics 2009-11-07 Dietrich Stauffer , M. E. J. Newman
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