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The calcium transport in biological systems is modelled as a reaction-diffusion process. Nonlinear calcium waves are then simulated using a stochastic cellular automaton whose rules are derived from the corresponding coupled partial…

Pattern Formation and Solitons · Physics 2010-03-30 Xin-She Yang

Living cells are capable of interacting with their environments in a variety of ways, including cell signalling, adhesion, and directed motion. These behaviours are often mediated by receptor molecules embedded in the cell membrane, which…

Biological Physics · Physics 2023-10-17 Hannah Sleath , Bortolo Mognetti , Yuval Elani , Lorenzo Di Michele

A numerical and experimental study of a control method aimed at channeling chaos by building barriers in phase space is performed on a paradigm for wave-particle interaction, i.e., a traveling wave tube. Control of chaotic diffusion is…

It has been reported that traveling waves propagate periodically and stably in sub-excitable systems driven by noise [Phys. Rev. Lett. \textbf{88}, 138301 (2002)]. As a further investigation, here we observe different types of traveling…

Chaotic Dynamics · Physics 2008-01-17 Fen-Ni Si , Quan-Xing Liu , Jin-Zhong Zhang , Lu-Qun Zhou

A stochastic walker model is proposed to describe the chemotactic guidance of growth cones, i.e. the tips of developing neurites. The model accounts for the influence of both attractive and repulsive chemical cues, which are emitted by the…

Analysis of PDEs · Mathematics 2025-11-04 Noah Geltner , Ansgar Jüngel

We present a mesoscopic model for reactive shock waves, which extends a previous model proposed in [G. Stoltz, Europhys. Lett. 76 (2006), 849]. A complex molecule (or a group of molecules) is replaced by a single mesoparticle, evolving…

Materials Science · Physics 2009-11-13 Jean-Bernard Maillet , Laurent Soulard , Gabriel Stoltz

The bacterium Escherichia coli (E. coli) moves in its natural environment in a series of straight runs, interrupted by tumbles which cause change of direction. It performs chemotaxis towards chemo-attractants by extending the duration of…

Quantitative Methods · Quantitative Biology 2010-07-12 Melissa Reneaux , Manoj Gopalakrishnan

The bacterium E. coli maneuvers itself to regions with high chemoattractant concentrations by performing two stereotypical moves: `runs', in which it moves in near straight lines, and `tumbles', in which it does not advance but changes…

Cell Behavior · Quantitative Biology 2007-11-29 Yariv Kafri , Rava Azeredo da Silveira

We consider the Keller-Segel model for chemotaxis with a nonlinear diffusion coefficent and a singular sensitivity function. We show the existence of travelling waves for wave speeds above a critical value, and establish local…

Analysis of PDEs · Mathematics 2012-02-20 Martin Meyries

Adaptive therapy is a recent paradigm in cancer treatment aiming at indefinite, safe containment of the disease when cure is judged unattainable. In modeling this approach, inherent limitations arise due to the structure of the vector…

Dynamical Systems · Mathematics 2025-03-20 Frederik J. Thomsen , Johan L. A. Dubbeldam

Sufficient conditions for either existence or non-existence of traveling wave solutions for a general quasi-linear reaction-diffusion-convection equation, possibly highly degenerate or singular, with discontinuous coefficients are…

Analysis of PDEs · Mathematics 2025-07-09 Umberto Guarnotta , Cristina Marcelli

This paper is concerned with a lattice dynamical system modeling the evolution of susceptible and infective individuals at discrete niches. We prove the existence of traveling waves connecting the disease-free state to non-trivial leftover…

Analysis of PDEs · Mathematics 2017-05-24 Yan-Yu Chen , Jong-Shenq Guo , Francois Hamel

Based on symmetry consideration of migration and shape deformations, we formulate phenomenologically the dynamics of cell crawling in two dimensions. Forces are introduced to change the cell shape. The shape deformations induce migration of…

Biological Physics · Physics 2016-03-23 Takao Ohta , Mitsusuke Tarama , Masaki Sano

We study a generic model for the polarisation and motility of self-propelled soft objects, biological cells or biomimetic systems, interacting with a viscous substrate. The active forces generated by the cell on the substrate are modelled…

Soft Condensed Matter · Physics 2015-06-23 M. Leoni , P. Sens

Collective cell migration in response to a chemical cue occurs in many biological processes such as morphogenesis and cancer metastasis. Clusters of migratory cells in these systems are capable of responding to gradients of less than 1%…

Biological Physics · Physics 2016-08-24 Julien Varennes , Bumsoo Han , Andrew Mugler

Bacteria typically reside in heterogeneous environments with various chemogradients where motile cells can gain an advantage over non-motile cells. Since motility is energetically costly, cells must optimize their swimming speed and…

Populations and Evolution · Quantitative Biology 2020-05-05 Gurdip Uppal , Weiyi Hu , Dervis Can Vural

Motivated by a recent prediction to engineer the dispersion relation of a waveguide constructed from atomic components [arXiv:2104.08121], we explore the possibility to create directional transport in an open, collective quantum system. The…

Quantum Physics · Physics 2022-04-05 R. Gutiérrez-Jáuregui , A. Asenjo-Garcia

The hydrodynamic limit for a kinetic model of chemotaxis is investigated. The limit equation is a non local conservation law, for which finite time blow-up occurs, giving rise to measure-valued solutions and discontinuous velocities. An…

Analysis of PDEs · Mathematics 2011-12-05 François James , Nicolas Vauchelet

We examine a general model for the Fisher-KPP (FKPP) equation with nonlocal advection. The main interpretation of this model is as describing a diffusing and logistically growing population that is also influenced by intraspecific…

Analysis of PDEs · Mathematics 2022-08-04 Christopher Henderson

We propose a minimal mathematical model to explain long-range coordination of dynamics of multiple cells in epithelial spreading, which may be induced, under different conditions, by a chemical signal, or mechanical stress, or both. The…

Biological Physics · Physics 2009-11-30 L. M. Pismen , S. Y. Shvartsman