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DNA is a promising storage medium, but its stability and occurrence of Indel errors pose a significant challenge. The relative occurrence of Guanine(G) and Cytosine(C) in DNA is crucial for its longevity, and reverse complementary base…

Information Theory · Computer Science 2024-01-15 NallappaBhavithran G , Selvakumar R

Quantum error correction is required to compensate for the fragility of the state of a quantum computer. We report the first experimental implementations of quantum error correction and confirm the expected state stabilization. In NMR…

Quantum Physics · Physics 2009-10-31 D. G. Cory , W. Mass , M. Price , E. Knill , R. Laflamme , W. H. Zurek , T. F. Havel , S. S. Somaroo

Reliable quantum information processing in the face of errors is a major fundamental and technological challenge. Quantum error correction protects quantum states by encoding a logical quantum bit (qubit) in multiple physical qubits. To be…

Biochemical computing attempts to process information with biomolecules and biological objects. In this work we review our results on analysis and optimization of single biochemical logic gates based on enzymatic reactions, and a network of…

Molecular Networks · Quantitative Biology 2010-09-22 Mary A. Arugula , Jan Halamek , Evgeny Katz , Dmitriy Melnikov , Marcos Pita , Vladimir Privman , Guinevere Strack

Using a numerical simulation of the evolution of a qubit interacting with the environment we show that quantum error detection and correction can work effectively even when the recovery procedure introduces errors.

Quantum Physics · Physics 2007-05-23 Pedro J. Salas , Angel L. Sanz

Genome analysis has revolutionized fields such as personalized medicine and forensics. Modern sequencing machines generate vast amounts of fragmented strings of genome data called reads. The alignment of these reads into a complete DNA…

Hardware Architecture · Computer Science 2024-11-22 Rotem Ben-Hur , Orian Leitersdorf , Ronny Ronen , Lidor Goldshmidt , Idan Magram , Lior Kaplun , Leonid Yavitz , Shahar Kvatinsky

We report an experimental evaluation of the "input-output surface" for a biochemical AND gate. The obtained data are modeled within the rate-equation approach, with the aim to map out the gate function and cast it in the language of logic…

Molecular Networks · Quantitative Biology 2010-10-12 V. Privman , G. Strack , D. Solenov , M. Pita , E. Katz

Modern biological science produces vast amounts of genomic sequence data. This is fuelling the need for efficient algorithms for sequence compression and analysis. Data compression and the associated techniques coming from information…

Data Structures and Algorithms · Computer Science 2011-09-05 Heba Afify , Muhammad Islam , Manal Abdel Wahed

Due to their sequential nature, traditional DNA synthesis methods are expensive in terms of time and resources. They also fabricate multiple copies of the same strand, introducing redundancy. This redundancy can be leveraged to enhance the…

Information Theory · Computer Science 2025-10-29 Frederik Walter , Yonatan Yehezkeally

The achievable information rates of optical communication networks have been widely increased over the past four decades with the introduction and development of optical amplifiers, coherent detection, advanced modulation formats, and…

Information Theory · Computer Science 2017-05-16 Tianhua Xu

Quantum error correction and fault-tolerant quantum computation are two fundamental concepts which make quantum computing feasible. While providing a theoretical means with which to ensure the arbitrary accuracy of any quantum circuit,…

Quantum Physics · Physics 2007-05-23 A. M. Stephens , S. J. Devitt , A. G. Fowler , J. C. Ang , L. C. L. Hollenberg

The quest for real-time dynamic optimization solutions in the process industry represents a formidable computational challenge, particularly within the realm of applications like model-predictive control, where rapid and reliable…

Optimization and Control · Mathematics 2024-04-29 Dennis Michael Nenno , Adrian Caspari

The growing demand for real-time data processing in applications such as neural networks and embedded control systems has spurred the search for faster, more efficient alternatives to traditional electronic systems. In response, we…

DNA has been discussed as a potential medium for data storage. Potentially it could be denser, could consume less energy, and could be more durable than conventional storage media such as hard drives, solid-state storage, and optical media.…

Emerging Technologies · Computer Science 2023-07-04 Arnav Solanki , Zak Griffin , Purab Ranjan Sutradhar , Amlan Ganguly , Marc D. Riedel

Certain physical aspects of quantum error correction are discussed for a quantum computer (n-qubit register) in contact with a decohering environment. Under rather plausible assumptions upon the form of the computer-environment interaction,…

Quantum Physics · Physics 2008-02-03 M. Biskup , P. Cejnar , R. Kotecky

In distributed quantum computing, the final solution of a problem is usually achieved by catenating these partial solutions resulted from different computing nodes, but intolerable errors likely yield in this catenation process. In this…

Quantum Physics · Physics 2025-08-22 Daowen Qiu , Ligang Xiao , Le Luo , Paulo Mateus

Nanopore sequencing, superior to other sequencing technologies for DNA storage in multiple aspects, has recently attracted considerable attention. Its high error rates, however, demand thorough research on practical and efficient coding…

Information Theory · Computer Science 2024-06-21 Anisha Banerjee , Yonatan Yehezkeally , Antonia Wachter-Zeh , Eitan Yaakobi

To ensure resilience against the unavoidable noise in quantum computers, quantum information needs to be encoded using an error-correcting code, and circuits must have a particular structure to be fault-tolerant. Compilation of…

Quantum Physics · Physics 2025-01-13 Ludwig Schmid , Tom Peham , Lucas Berent , Markus Müller , Robert Wille

Quantum algorithms have the potential to provide exponential speedups over some of the best known classical algorithms. These speedups may enable quantum devices to solve currently intractable problems such as those in the fields of…

Quantum Physics · Physics 2018-12-13 Ciarán Ryan-Anderson

A number of methods have been proposed over the last decade for encoding information using deoxyribonucleic acid (DNA), giving rise to the emerging area of DNA data embedding. Since a DNA sequence is conceptually equivalent to a sequence of…

Information Theory · Computer Science 2014-10-09 Félix Balado