Related papers: To knot or not to knot
We give two different, statistically consistent definitions of the length l of a prime knot tied into a polymer ring. In the good solvent regime the polymer is modelled by a self avoiding polygon of N steps on cubic lattice and l is the…
The unknotting number of a knot is bounded from below by its slice genus. It is a well-known fact that the genera and unknotting numbers of torus knots coincide. In this note we characterize quasipositive knots for which the genus bound is…
We present computer simulations to examine probability distributions of gyration radius for the no-thickness closed polymers of N straight segments of equal length. We are particularly interested in the conditional distributions when the…
We report on the geometry and mechanics of knotted stiff strings. We discuss both closed and open knots. Our two main results are: (i) Their equilibrium energy as well as the equilibrium tension for open knots depend on the type of knot as…
The study of knots and links from a probabilistic viewpoint provides insight into the behavior of "typical" knots, and opens avenues for new constructions of knots and other topological objects with interesting properties. The knotting of…
The size of a zero thickness (no excluded volume) polymer ring is shown to scale with chain length $N$ in the same way as the size of the excluded volume (self-avoiding) linear polymer, as $N^{\nu}$, where $\nu \approx 0.588$. The…
A slender object undergoing an axial compression will buckle to alleviate the stress. Typically the morphology of the deformed object depends on the bending stiffness for solids, or the viscoelastic properties for liquid threads. We study a…
In this paper the number and lengths of minimal length lattice knots confined to slabs of width $L$, is determined. Our data on minimal length verify the results by Sharein et.al. (2011) for the similar problem, expect in a single case,…
Knotted proteins, when forced through the pores, can get stuck if the knots in their backbone tighten under force. Alternatively, the knot can slide off the chain, making translocation possible. We construct a simple energy landscape model…
A knot is an an embedding of a circle into three-dimensional space. We say that a knot is unknotted if there is an ambient isotopy of the embedding to a standard circle. By representing knots via planar diagrams, we discuss the problem of…
We discuss the probability of random knotting for a model of self-avoiding polygons whose segments are given by cylinders of unit length with radius $r$. We show numerically that the characteristic length of random knotting is roughly…
Motivated by recent advances in single molecule manipulation techniques that enabled several groups to tie knots in individual polymer strands and to monitor their dynamics, we have used computer simulations to study "friction knots"…
Given a knot $K$ parametrized by $r: [0,2\pi] \to \mathbb{R}^3$, we can define the electric potential on its complement by $\Phi(x) = \int_0^{2\pi} \frac{|r'(t)|}{|x - r(t)|}dt$. Physicists and knot theorists want to understand the critical…
The ropelength of a knot is the quotient of its length by its thickness. We consider a family of energy functions for knots, depending on a power p, which approach ropelength as p increases. We describe a numerically computed trefoil knot…
This paper presents a simple algorithm to check whether reachability probabilities in parametric Markov chains are monotonic in (some of) the parameters. The idea is to construct - only using the graph structure of the Markov chain and…
These notes are based on the lectures given by the author during Winter Braids IX in Reims in March 2019. We discuss slice knots and why they are interesting, as well as some ways to decide if a given knot is or is not slice. We describe…
We introduce an alternative stratification of knots: by the size of lattice on which a knot can be first met. Using this classification, we find ratio of unknots and knots with more than 10 minimal crossings inside different lattices and…
A classical knot is described by a one-stroke trajectory with entanglements of a string. The replica method appears as a powerful tool in statistical mechanics for a polymer or self-avoiding walk. We consider this replica N to 0 limit in…
This paper explores the problem of unknotting closed braids and classical knots in mathematical knot theory. We apply evolutionary computation methods to learn sequences of moves that simplify knot diagrams, and show that this can be…
We give a necessary condition for a torus knot to be untied by a single twisting. By using this result, we give infinitely many torus knots that cannot be untied by a single twisting.