Related papers: To knot or not to knot
A well-known algorithm for unknotting knots involves traversing a knot diagram and changing each crossing that is first encountered from below. The minimal number of crossings changed in this way across all diagrams for a knot is called the…
A coarse-grained computational model is used to investigate how the bending rigidity of a polymer under tension affects the formation of a trefoil knot. Thermodynamic integration techniques are applied to demonstrate that the free-energy…
In mathematics, a knot is a single strand of string crossed over itself any number of times, and connected at the ends. The Reidemeister Moves have been proven to be the three core moves necessary to fully untangle a knot. Some knots can be…
We present a numerical study of the effect of knotting on the ejection of flexible and semiflexible polymers from a spherical, virus-like capsid. The polymer ejection rate is primarily controlled by the knot, which moves to the hole in the…
In the loop representation the quantum constraints of gravity can be solved. This fact allowed significant progress in the understanding of the space of states of the theory. The analysis of the constraints over loop dependent wavefunctions…
The interplay of geometrical and topological entanglement in semiflexible knotted polymer rings confined inside a spherical cavity is investigated using advanced numerical methods. By using stringent and robust algorithms for locating…
The most tight conformations of prime knots are found with the use of the SONO algorithm. Their curvature and torsion profiles are calculated. Symmetry of the knots is analysed. Connections with the physics of polymers are discussed.
A $k$-height on a graph $G=(V, E)$ is an assignment $V\to\{0, \ldots, k\}$ such that the value on ajacent vertices differs by at most $1$. We study the Markov chain on $k$-heights that in each step selects a vertex at random, and, if…
A loop of chain can move along its own tangents, maintaining a steady shape. An open-ended chain undergoing a nontrivial motion must change its shape. One consequence is that chains pulled around objects will fail to follow the contours of…
We estimate by Monte Carlo simulations the configurational entropy of $N$-steps polygons in the cubic lattice with fixed knot type. By collecting a rich statistics of configurations with very large values of $N$ we are able to analyse the…
Knots are familiar entities that appear at a captivating nexus of art, technology, mathematics, and science. As topologically stable objects within field theories, they have been speculatively proposed as explanations for diverse persistent…
In this paper, we study a geometric/topological measure of knots and links called the nullification number. The nullification of knots/links is believed to be biologically relevant. For example, in DNA topology, one can intuitively regard…
Knot theory provides a powerful tool for the understanding of topological matters in biology, chemistry, and physics. Here knot theory is introduced to describe topological phases in the quantum spin system. Exactly solvable models with…
We classify graphs that are 0, 1, or 2 edges short of being complete partite graphs with respect to intrinsic linking and intrinsic knotting. In addition, we classify intrinsic knotting of graphs on 8 vertices. For graphs in these families,…
There are 352.2 million prime knots in the 3-sphere with at most 19 crossings. We study which of these knots are slice, in both the smooth and topological categories. While no algorithm is known for deciding whether a given knot is slice in…
The signature function of a knot is a locally constant integer valued function with domain the unit circle. The jumps (i.e., the discontinuities) of the signature function can occur only at the roots of the Alexander polynomial on the unit…
In this note, we attempt to find counterexamples to the conjecture that the ideal form of a knot, that which minimizes its contour length while respecting a no-overlap constraint, also minimizes the volume of the knot, as determined by its…
We study the geometry of interacting knotted solitons. The interaction is local and advances either as a three-body or as a four-body process, depending on the relative orientation and a degeneracy of the solitons involved. The splitting…
We introduce a collection of complex networks generated by a combination of preferential attachment and a previously unexamined process of "splitting" nodes of degree $k$ into $k$ nodes of degree 1. Four networks are considered, each…
We solve the Cauchy problem for the relativistic closed string in Minkowski space $M^{3+1}$, including the cases where the initial data has a knot like topology. We give the general conditions for the world sheet of a closed knotted string…