Related papers: Healing Length and Bubble Formation in DNA
We use the hyper-netted chain approximation of liquid state theory to analyze the evolution with density of the pair correlation function in a model of soft spheres with harmonic repulsion. As observed in recent experiments on jammed soft…
We investigate the creation of scalar particles inside a region delimited by a bubble which is expanding with non-zero acceleration. The bubble is modelled as a thin shell and plays the role of a moving boundary, thus influencing the…
Under continuous laser irradiation, noble metal nanoparticles immersed in water can quickly heat up, leading to the nucleation of so-called plasmonic bubbles. In this work, we want to further understand the bubble nucleation and growth…
The physical approach of a small particle (virus, medical drug) to the cell membrane represents the crucial first step before active internalization and is governed by thermal diffusion. Using a fully analytical theory we show that the…
DNA hybridization is a fundamental reaction with wide-ranging applications in biotechnology. The nearest-neighbor (NN) model provides the most reliable description of the energetics of duplex formation. Most DNA thermodynamics studies have…
We calculate numerically the quasiparticle effective mass (m*) renormalization as a function of temperature and electron density in two- and three-dimensional electron systems with long-range Coulomb interaction. In two dimensions, the…
We investigate melting transition of DNA sequences embedded in a Langevin fluctuation-dissipation thermal bath. Torsional effects are considered by a twist angle $\varphi$ between neighboring base pairs stacked along the molecule backbone.…
The dynamics of inertial particles in Rayleigh-B\'{e}nard convection, where both particles and fluid exhibit thermal expansion, is studied using direct numerical simulations (DNS). We consider the effect of particles with a thermal…
We have constructed photo-ionization models of five galactic bulge planetary nebulae using our automatic method which enables a fully self-consistent determination of the physical parameters of a planetary nebula. The models are constrained…
The process of a non-equilibrium chemical composition formation in the crust of a new born neutron star is considered, during cooling due to neutrino energy losses. A model is constructed for explaining accumulation of a large quantity of…
Despite numerous attempts, the understanding of the thermal denaturation of DNA is still a challenge due to the lack of structural data at the transition since standard experimental approaches to DNA melting are made in solution and do not…
Starting from the QCD Lagrangian and the surface tension of QCD bubbles we derive the critical size of bubbles, the nucleation probability and the nucleation site separation distance. We find the separation of sites is more than an order of…
We present a study on the role of defects on the stability of short DNA molecules. We consider short DNA molecules (16 base pairs) and investigate the thermal as well as mechanical denaturation of these molecules in the presence of defects…
The ionization of a one-dimensional model Helium atom in short laser pulses using time-dependent density functional theory is investigated. We calculate ionization probabilities as a function of laser intensity by approximating the…
The Scintillating Bubble Chamber collaboration is searching for Weakly Interacting Massive Particles using a novel bubble chamber with intended thresholds as low as 100eV. Existing molecular dynamics simulations of bubble formation in…
Test experiments of hybridization in DNA microarrays show systematic deviations from the equilibrium isotherms. We argue that these deviations are due to the presence of a partially hybridized long-lived state, which we include in a kinetic…
Although mechanical properties of DNA are well characterized at the kilo base-pair range, a number of recent experiments have suggested that DNA is more flexible at shorter length scales, which correspond to the regime that is crucial for…
Temperature dependent relativistic mean-field (RMF) plus BCS approach has been used for the first time to investigate the anti-bubble effect of the temperature and deformation in the light, medium-heavy and superheavy nuclei. Influence of…
Two-dimensional dry foams coarsen according to the von Neumann law as $dA/dt \propto (n-6)$ where $n$ is the number of sides of a bubble with area $A$. Such foams reach a self-similar scaling state where area and side-number distributions…
There is a long-standing experimental observation that the melting of topologically constrained DNA, such as circular-closed plasmids, is less abrupt than that of linear molecules. This finding points to an intriguing role of topology in…