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Related papers: DNA electrophoresis in designed channels

200 papers

We characterize the electrokinetic flow due to the transport of electrolytes embedded in nanochannels of varying cross-section with inhomogeneous slip on their walls, modeled as an effective slip length on the channel wall. We show that,…

Fluid Dynamics · Physics 2025-04-10 F. Carusela , J. Harting , P. Malgaretti

Numerical analyses of transient electro-osmosis of a typical non-Newtonian liquid induced by DC and AC electric fields in a rectangular microchannel are conducted in the framework of continuum fluid mechanics. The famous power-law…

Fluid Dynamics · Physics 2015-07-23 Cunlu Zhao , Chun Yang

The translocation of double-stranded DNA through a solid-state nanopore may either decrease or increase the ionic current depending on the ionic concentration of the surrounding solution. Below a certain crossover ionic concentration, the…

Biological Physics · Physics 2019-09-04 Vivian Wang , Niklas Ermann , Ulrich F. Keyser

The cage model for polymer reptation is extended to simulate DC electrophoresis. The drift velocity v of a polymer with length L in an electric field with strength E shows three different regions: if the strength of field is small, the…

Statistical Mechanics · Physics 2007-05-23 H. R. W. Beljaars , A. van Heukelum

Charge migration along DNA molecules has attracted scientific interest for over half a century. Reports on possible high rates of charge transfer between donor and acceptor through the DNA, obtained in the last decade from solution…

Materials Science · Physics 2009-11-10 Danny Porath , Gianaurelio Cuniberti , Rosa Di Felice

The pattern of branched electron flow revealed by scanning gate microscopy shows the distribution of ballistic electron trajectories. The details of the pattern are determined by the correlated potential of remote dopants with an amplitude…

Mesoscale and Nanoscale Physics · Physics 2018-07-12 B A Braem , C Gold , S Hennel , M Röösli , M Berl , W Dietsche , W Wegscheider , K. Ensslin , T Ihn

Study of electrokinetics of nematic liquid crystals (LCs) with dissolved impurities hold utmost importance in understanding director distribution characteristics and modified flow rheology. However, no concrete theory for the non-uniform…

Fluid Dynamics · Physics 2016-03-23 Jayabrata Dhar , Antarip Poddar , Suman Chakraborty

We study the reentrant condensation of polyelectrolytes in dilute solutions of small multivalent salts, whose phase-transition mechanism remains poorly understood. Motivated by recent full atomic simulation results reported by the Caltech…

Soft Condensed Matter · Physics 2024-05-13 Huaisong Yong , Bilin Zhuang , Sissi de Beer

Positions of protons in DNA hydrogen bonds are fundamental for the fidelity of the replication process. Because the hydrogen bond is partially covalent the electronic structure of DNA plays an important role in the replication process.…

Strongly Correlated Electrons · Physics 2007-05-23 Chun-Min Chang , A. H. Castro Neto , A. R. Bishop

The transport of macromolecules, such as DNA, through the cytoskeleton is critical to wide-ranging cellular processes from cytoplasmic streaming to transcription. The rigidity and steric hindrances imparted by the network of filaments…

The dynamics of ideally polarizable spherical particles in concentrated suspensions under the effects of nonlinear electrokinetic phenomena is analysed using large-scale numerical simulations. Particles are assumed to carry no net charge…

Soft Condensed Matter · Physics 2019-07-23 Siamak Mirfendereski , Jae Sung Park

Applying an electric field to polarisable colloidal particles, whose permittivity differs from that of the dispersing medium, generates induced dipoles that promote the formation of string-like clusters and ultimately alter the fluid…

Soft Condensed Matter · Physics 2022-11-23 Luca Tonti , Fabián Alonso García Daza , Alessandro Patti

When the DNA double helix is subjected to external forces it can stretch elastically to elongations reaching 100% of its natural length. These distortions, imposed at the mesoscopic or macroscopic scales, have a dramatic effect on…

Materials Science · Physics 2009-11-13 Ryan Barnett , Paul Maragakis , Ari Turner , Maria Fyta , Efthimios Kaxiras

We propose a protocol to model accurately the electromechanical behavior of dielectric elastomer membranes using experimental data of stress-stretch and voltage-stretch tests. We show how the relationship between electric displacement and…

Soft Condensed Matter · Physics 2018-11-14 Giuseppe Zurlo , Michel Destrade , Tongqing Lu

The structure and thermodynamic state of a system changes under the influence of external electric fields. Neutral systems are characterized by their dielectric constant epsilon, while charged ones also by their charge distribution. In this…

Soft Condensed Matter · Physics 2009-12-10 Yoav Tsori

We study electrostatic interaction between molecules of the DNA in which a number of phosphate groups of the sugar-phosphate backbone are exchanged for the pyrophosphate ones. We employ a model in which the DNA is considered as a…

Soft Condensed Matter · Physics 2008-08-08 V. L. Golo , E. I. Kats , S. A. Kuznetsova , Yu. S. Volkov

A DNA-protein complex modelled by a semiflexible chain and an attractive spherical core is studied in the situation when an external stretching force is acting on one end monomer of the chain while the other end monomer is kept fixed in…

Soft Condensed Matter · Physics 2009-11-10 Takahiro Sakaue , Hartmut Löwen

We study charge transport in an ionic solution in a confined nanoscale geometry in the presence of an externally applied electric field and immobile background charges. For a range of parameters, the ion current shows non-monotonic behavior…

Statistical Mechanics · Physics 2015-05-13 Punyabrata Pradhan , Yariv Kafri , Dov Levine

In present work it is suggested the concept of continual multi-electrode system being realized on the elongated electrically conducting element immersed into electrolyte. Conjugation of such kind of system with the point-contact structure…

Mesoscale and Nanoscale Physics · Physics 2016-09-08 A. P. Pospelov , G. V. Kamarchuk

Clean two-dimensional Fermi liquids are now known to exhibit an intermediate \emph{tomographic} regime, between ballistic and Navier--Stokes transport, caused by the anomalously slow relaxation of parity-odd multipolar deformations of the…

Strongly Correlated Electrons · Physics 2026-03-30 Davis Thuillier , Thomas Scaffidi