Related papers: Numerical study on a disordered model for DNA dena…
Under certain symmetries, degenerate points in three-dimensional metals form one-dimensional nodal lines. These nodal lines sometimes exhibit intricate knotted structures and have been studied in various contexts. As one of the most common…
Modeling charge transport in DNA is essential to understand and control the electrical properties and develop DNA-based nanoelectronics. DNA is a fluctuating molecule that exists in a solvent environment, which makes the electron…
The phase transition of $(PolyA/PolyT)_{100}$ duplex into the denaturated state is studied in the Peyrard-Bishop-Dauxois model by the method of direct molecular-dynamical modeling. The temperature dependencies of the total energy and heat…
Many thermodynamic instabilities in one dimension (e.g. DNA thermal denaturation, wetting of interfaces) can be described in terms of simple models involving harmonic coupling between nearest neighbors and an asymmetric on-site potential…
In these proceedings, we first summarize some general properties of phase transitions in the presence of quenched disorder, with emphasis on the following points: the need to distinguish typical and averaged correlations, the possible…
We consider the random wetting transition on the Cayley tree, i.e. the problem of a directed polymer on the Cayley tree in the presence of random energies along the left-most bonds. In the pure case, there exists a first-order transition…
We introduce a three-state model for a single DNA chain under tension that distinguishes between B-DNA, S-DNA and M (molten or denatured) segments and at the same time correctly accounts for the entropy of molten loops, characterized by the…
We present the first detailed numerical study in three dimensions of a first-order phase transition that remains first-order in the presence of quenched disorder (specifically, the ferromagnetic/paramagnetic transition of the site-diluted…
We study numerically the effect of sequence heterogeneity on the thermodynamic properties of a Poland-Scheraga model for DNA denaturation taking into account self-avoidance, i.e. with exponent c_p=2.15 for the loop length probability…
We investigate in this paper the ground state and the nature of the transition from an orientational ordered phase at low temperature to the disordered state at high temperature in a molecular crystal. Our model is a Potts model which takes…
We study DNA denaturation by integrating elasticity -- as described by the Gaussian network model -- with bond binding energies, distinguishing between different base-pair and stacking energies. We use exact calculation, within the model,…
The concept of a vestigial nematic order emerging from a "mother" spin or charge density-wave state has been applied to describe the phase diagrams of several systems, including unconventional superconductors. In a perfectly clean system,…
We explore the rich landscape of higher-form and non-invertible symmetries that emerge at low energies in generic ordered phases. Using that their charge is carried by homotopy defects (i.e., domain walls, vortices, hedgehogs, etc.), in the…
The scaling theory of critical phenomena has been successfully extended for classical first order transitions even though the correlation length does not diverge in these transitions. In this paper we apply the scaling ideas to quantum…
Phase transitions induced by varying the strength of disorder in the large-q state Potts model in 3d are studied by analytical and numerical methods. By switching on the disorder the transition stays of first order, but different…
The papers [1,2] consider unbinding of a disordered heteropolymer. They find the first order phase transition [1] when disorder is strong (i.e. the ratio v of the binding energies is large; in DNA v is~1.1) and the Griffiths singularity,…
The simulation of the transition sequence of superheated Type I superconducting granules (SSG) in disordered suspensions when an external magnetic field is slowly increased from zero has been studied. Simulation takes into account…
Double stranded DNA chain is known to have nontrivial elasticity. We study the effect of this elasticity on the denaturation profile of DNA oligomer by constraining one base pair at one end of the oligomer to remain in unstretched (or…
Gravitational wave (GW) detections of binary neutron star inspirals will be crucial for constraining the dense matter equation of state (EoS). We demonstrate a new degeneracy in the mapping from tidal deformability data to the EoS, which…
We consider consequences of local disorder in systems experiencing first order phase transitions. Such systems can be of rather different nature. For example, manganates showing gigantic magnetoelectric effect, doped antiferroelectrics or…