Related papers: Modeling truncated hemoglobin vibrational dynamics
We determine the low-energy spectrum and the eigenstates for a two-bosonic mode nonlinear model by applying the In\"{o}n\"{u}-Wigner contraction method to the Hamiltonian algebra. This model is known to well represent a Bose-Einstein…
Following a recent work (briefly reviewed below) we consider temporal fluctuations in the reduced density matrix elements for a coupled system involving a pair of kicked rotors as also one made up of a pair of Harper Hamiltonians. These…
Quantum mechanical few-body systems in reduced dimensionalities can exhibit many interesting properties such as scale-invariance and universality. Analytical descriptions are often available for integer dimensionality, however, numerical…
Open quantum systems theory is central to describing the dynamics and equilibration of dilute-gas Bose-Einstein condensates (BECs). We present an analysis of the linearized stochastic projected Gross-Pitaevskii equation (SPGPE) describing…
We propose a stochastic method to generate exactly the overdamped Langevin dynamics of semi-flexible Gaussian chains, conditioned to evolve between given initial and final conformations in a preassigned time. The initial and final…
We discuss the non-equilibrium time evolution of the phase field in the sine-Gordon model using two very different approaches: the truncated Wigner approximation and the truncated conformal space approach. We demonstrate that the two…
We experimentally explore solutions to a model Hamiltonian dynamical system derived in Colliander et al., 2012, to study frequency cascades in the cubic defocusing nonlinear Schr\"odinger equation on the torus. Our results include a…
We model the spatiotemporal dynamics of cellular protein concentrations near membranes composed of different lipids using a three-variable continuum model for membrane-bound protein, cytosolic protein, and the local composition of a binary…
We study the collision dynamics of two Bose-Einstein condensates with their dynamical wave functions modeled by a set of coupled, time-dependent Gross-Pitaevskii equations. Beginning with an effective one-dimensional system, we identify…
We obtain the dynamics in number and phase difference, for Bose condensates that tunnel between two wells of a double-well atomic trap, using the (nonlinear) Gross-Pitaevskii equation.The dynamical equations are of the canonical form for…
Confined granular fluids, placed in a shallow box that is vibrated vertically, can achieve homogeneous stationary states thanks to energy injection mechanisms that take place throughout the system. These states can be stable even at high…
Starting from the stochastic thermodynamics description of two coupled underdamped Brownian particles, we showcase and compare three different coarse-graining schemes leading to an effective thermodynamic description for the first of the…
Time-resolved single-molecule biophysical experiments yield data that contain a wealth of dynamic information, in addition to the equilibrium distributions derived from histograms of the time series. In typical force spectroscopic setups…
We numerically study out-of-equilibrium dynamics in a family of Heisenberg models with $1/r^6$ power-law interactions and positional disorder. Using the semi-classical discrete truncated Wigner approximation (dTWA) method, we investigate…
The dynamics of Josephson-like oscillations between two coupled Bose-Einstein condensates is studied using the time-dependent variational method. We suppose that the quantum state of the condensates is a gaussian wave-packet which can…
In the presence of a finite interlayer displacement field bilayer graphene has an energy gap that is dependent on stacking and largest for the stable AB and BA stacking arrangements. When the relative orientations between layers are twisted…
We study how well magnetic models can be implemented with ultracold bosonic atoms of two different hyperfine states in an optical superlattice. The system is captured by a two-species Bose-Hubbard model, but realizes in a certain parameter…
By means of the discrete truncated Wigner approximation we study dynamical phase transitions arising in the steady state of transverse-field Ising models after a quantum quench. Starting from a fully polarized ferromagnetic initial…
We applied coherence analysis to molecular dynamics simulations of the plant protein crambin, a thionin storage protein found in Abyssinian cabbage. Coherence analysis was developed by engineers to identify linear interactions, without…
We study the nonequilibrium dynamics of two particles confined in two spatially separated harmonic potentials and linearly coupled to the same thermally fluctuating scalar field, a cartoon for optically trapped colloids in contact with a…