Related papers: Modeling truncated hemoglobin vibrational dynamics
We present a kinetic description of Bose-Einstein condensation for particle systems being out of thermal equilibrium, which may happen for gluons produced in the early stage of ultra-relativistic heavy-ion collisions. The dynamics of bosons…
This colloquium gives an overview of recent theoretical and experimental progress in the area of nonequilibrium dynamics of isolated quantum systems. We particularly focus on quantum quenches: the temporal evolution following a sudden or…
We describe a pairing mean-field theory related to the Hartree-Fock-Bogoliubov approach, and apply it to the dynamics of dissociation of a molecular Bose-Einstein condensate (BEC) into correlated bosonic atom pairs. We also perform the same…
In applications of mechanics, including quantum mechanics, we often consider complex systems, where complete solutions of the underlying "fundamental" equations is both impractical and unnecessary to describe appropriate observations…
In this paper we consider the dynamics of harmonically-confined atomic gases. We present various general results which are independent of particle statistics, interatomic interactions and dimensionality. Of particular interest is the…
We study the homogenization of a novel microscopic tridomain system, allowing for a more detailed analysis of the properties of cardiac conduction than the classical bidomain and monodomain models. In (Acta Appl.Math. 179 (2022) 1--35), we…
The truncated Wigner approximation is an established approach that describes the dynamics of weakly interacting Bose gases beyond the mean-field level. Although it allows a quantum field to be expressed by a stochastic c-number field, the…
The dynamics of the Hamiltonian mean field model is studied in the context of continuous time random walks. We show that the sojourn times in cells in the momentum space are well described by a L\'evy truncated distribution. Consequently…
Turbulent fluid flows exhibit a complex small-scale structure with frequently occurring extreme velocity gradients. Particles probing such swirling and straining regions respond with an intricate shape-dependent orientational dynamics,…
We discuss the dynamics of a Bose-Einstein condensate of atoms which is suddenly coupled to a condensate of molecules by an optical or magnetic Feshbach resonance. Three limiting regimes are found and can be understood from the transient…
We introduce a coarse-graining transformation for tensor networks that can be applied to study both the partition function of a classical statistical system and the Euclidean path integral of a quantum many-body system. The scheme is based…
The theory of biochemical processes needs simple but realistic models of phenomena underlying microscopic dynamics of proteins. Many experiments performed in the 1980s have demonstrated that within the protein native state, apart from usual…
A discrete-to-continuum analysis for free-boundary problems related to crystalline films deposited on substrates is performed by $\Gamma$-convergence. The discrete model here introduced is characterized by an energy with two contributions,…
The network paradigm is increasingly used to describe the topology and dynamics of complex systems. Here we review the results of the topological analysis of protein structures as molecular networks describing their small-world character,…
We numerically study crystal nucleation and glassy slow dynamics of the one-component Gaussian core model (GCM) at high densities. The nucleation rate at a fixed supersaturation is found to decrease as the density increases. At very high…
The two-site Bose--Hubbard model is a simple model used to study Josephson tunneling between two Bose--Einstein condensates. In this work we give an overview of some mathematical aspects of this model. Using a classical analysis, we study…
Quantum simulation has begun to penetrate the field of quantum chemistry in hopes of efficiently calculating ground state energies and approximating real-time evolution. With modern research highlighting nonadiabatic dynamics, tunably…
Continuum atomic relaxation models for twisted bilayer graphene involve minimization of the sum of intralayer elastic energy and interlayer adhesion energy. The elastic energy favors a rigid twist i.e. no distortion in the twisted honeycomb…
We study the one-dimensional Bose-Hubbard model under the resonant condition, where a series of quantum slinky oscillations occur in a two-site system for boson numbers $n\in \lbrack 2,\infty )$. In the strong interaction limit, it can be…
The dynamics of granular media in the jammed, glassy region is described in terms of "modes", by applying a Principal Component Analysis (PCA) to the covariance matrix of the position of individual grains. We first demonstrate that this…