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The flexibility of the bacterial flagellar hook is believed to have substantial consequences for microorganism locomotion. Using a simplified model of a rigid flagellum and a flexible hook, we show that the paths of axisymmetric cell bodies…

Biological Physics · Physics 2021-10-28 Zonghao Zou , Wilson Lough , Saverio E. Spagnolie

A numerical study of decaying stably-stratified flows is performed. Relatively high stratification and moderate Reynolds numbers are considered, and a particular emphasis is placed on the role of helicity (velocity-vorticity correlations).…

Fluid Dynamics · Physics 2015-06-12 C. Rorai , D. Rosenberg , A. Pouquet , P. D. Mininni

The present habilitation thesis in theoretical biological physics addresses two central dynamical processes in cells and organisms: (i) active motility and motility control and (ii) self-organized pattern formation. The unifying theme is…

Cell Behavior · Quantitative Biology 2018-03-21 Benjamin M. Friedrich

Non-equilibrium processes which convert chemical energy into mechanical motion enable the motility of organisms. Bundles of inextensible filaments driven by energy transduction of molecular motors form essential components of micron-scale…

Soft Condensed Matter · Physics 2013-06-13 Abhrajit Laskar , Rajeev Singh , Somdeb Ghose , Gayathri Jayaraman , P. B. Sunil Kumar , R. Adhikari

We theoretically study in detail the hydrodynamic coupling of two equal-sized colloidal spheres at low Reynolds numbers assuming the particles to be harmonically trapped with respect to both their positions and orientations. By taking into…

Soft Condensed Matter · Physics 2007-05-23 Michael Reichert , Holger Stark

We study the hydrodynamic interaction between two closely-spaced waving elastic cylinders immersed within a viscous liquid, at the creeping flow regime. The cylinders are actuated by a forced oscillation of the slope at their clamped end…

Fluid Dynamics · Physics 2020-04-28 Roei Elfasi , Yossef Elimelech , Amir D. Gat

In this fluid dynamics video, we demonstrate the microscale mixing enhancement of passive tracer particles in suspensions of swimming microalgae, Chlamydomonas reinhardtii. These biflagellated, single-celled eukaryotes (10 micron diameter)…

It is known that obstacles can hydrodynamically trap bacteria and synthetic microswimmers in orbits, where the trapping time heavily depends on the swimmer flow field and noise is needed to escape the trap. Here, we use experiments and…

We study theoretically and numerically the coupling and rotational hydrodynamic interactions between spherical particles near a planar elastic membrane that exhibits resistance towards shear and bending. Using a combination of the multipole…

Turbulence sustains out-of-equilibrium energy fluxes shaped by conservation laws. Three-dimensional flows conserve energy and sign-indefinite helicity, both being transferred to small scales. Yet in 3D rotating turbulence, energy is…

Fluid Dynamics · Physics 2026-02-24 Sébastien Gomé , Anna Frishman

The course of a peritrichous bacterium such as E. coli crucially depends on the level of synchronization and self-organization of several rotating flagella. However, the rotation of each flagellum generates counter body movements which in…

Biological Physics · Physics 2015-11-11 Tapan Chandra Adhyapak , Holger Stark

Motile eukaryotic cells propel themselves in viscous fluids by passing waves of bending deformation down their flagella. An infinitely long flagellum achieves a hydrodynamically optimal low-Reynolds number locomotion when the angle between…

Biological Physics · Physics 2010-03-03 Saverio E. Spagnolie , Eric Lauga

Eukaryotic flagella are active structures with a complex architecture of microtubules, motor proteins and elastic links. They are capable of whiplike motions driven by motors sliding along filaments that are themselves constrained at an…

Soft Condensed Matter · Physics 2012-11-22 Raghunath Chelakkot , Arvind Gopinath , L. Mahadevan , Michael F. Hagan

Metachronal paddling is a swimming strategy in which an organism oscillates sets of adjacent limbs with a constant phase lag, propagating a metachronal wave through its limbs and propelling it forward. This limb coordination strategy is…

Fluid Dynamics · Physics 2025-07-28 Alana A. Bailey , Robert D. Guy

By taking into account the hydrodynamic interactions in a one dimensional array of model cilia attached to a no-slip cylinderical surface, we investigate their synchronized motion. We show, how does the emergence of metachronal waves depend…

Biological Physics · Physics 2017-05-31 Aref Ghorbani , Ali Najafi

We perform numerical simulations of decaying rotating stratified turbulence and show, in the Boussinesq framework, that helicity (velocity-vorticity correlation), as observed in super-cell storms and hurricanes, is spontaneously created due…

Fluid Dynamics · Physics 2013-11-28 Raffaele Marino , Pablo D. Mininni , Duane Rosenberg , Annick Pouquet

We characterize the bundle properties for three different strains of \textit{B. subtilis} bacteria with various numbers of flagella. Our study reveals that, surprisingly, the number of bundles is independent of the number of flagella, and…

Biological Physics · Physics 2019-12-10 Javad Najafi , Florian Altegoer , Gert Bange , Christian Wagner

A density functional theory for colloidal dynamics is presented which includes hydrodynamic interactions between the colloidal particles. The theory is applied to the dynamics of colloidal particles in an optical trap which switches…

Soft Condensed Matter · Physics 2009-11-13 M. Rex , H. Loewen

We consider synchronization of coupled dynamical systems when different types of interactions are simultaneously present. We assume that a set of dynamical systems are coupled through the connections of two or more distinct networks (each…

Chaotic Dynamics · Physics 2015-05-28 Francesco Sorrentino

We study how hydrodynamic interactions affect the collective behaviour of active particles suspended in a fluid at high concentrations, with particular attention to lubrication forces which appear when the particles are very close to one…

Soft Condensed Matter · Physics 2018-05-29 Natsuhiko Yoshinaga , Tanniemola B. Liverpool