Related papers: Solitons in alpha-helical proteins
In the present work, we numerically explore the existence and stability properties of different types of configurations of dark-bright solitons, dark-bright soliton pairs and pairs of dark-bright and dark solitons in discrete settings,…
Nonlinear periodic systems, such as photonic crystals and Bose-Einstein condensates (BECs) loaded into optical lattices, are often described by the nonlinear Schr\"odinger/Gross-Pitaevskii equation with a sinusoidal potential. Here, we…
Fundamental solitons pinned to the interface between two discrete lattices coupled at a single site are investigated. Serially and parallel-coupled identical chains (\textit{System 1} and \textit{System 2}), with the self-attractive on-site…
We study symmetric and asymmetric optical multi-peak solitons on a continuous wave background in the femtosecond regime of a single-mode fiber. Key characteristics of such multi-peak solitons, as the formation mechanism, propagation…
Davydova-Lashkin-Fokas-Lenells equation (DLFLE) is a gauged equivalent form of Fokas-Lenells equation (FLE) that addresses both spatio-temporal dispersion (STD) and nonlinear dispersion (ND) effects. The balance between those effects…
Using the variational approximation(VA) and direct simulations, we find stable 2D and 3D solitons in the self-attractive Gross-Pitaevskii equation (GPE) with a potential which is uniform in one direction ($z$) and periodic in the others…
In this work we study the dynamics and stability of charged solitons in trans-polyacetylene (tPA), and revisit the issue of the stability of these non-linear excitations under the effect of an external electric field applied parallel to the…
We develop a general classification of the infinite number of families of solitons and soliton complexes in the one-dimensional Gross-Pitaevskii/nonlinear Schrodinger equation with a nonlinear lattice pseudopotential, i.e., periodically…
Many physical systems can be mapped onto solved or "solvable" models of magnetism. In this work, we have mapped the statistical mechanics of columnar phases of ideally helical rigid DNA -- subject to the earlier found unusual, frustrated…
The enterobacteria lambda phage is a paradigm temperate bacteriophage. Its lysogenic and lytic life cycles echo competition between the DNA binding $\lambda$-repressor (CI) and CRO proteins. Here we scrutinize the structure, stability and…
This study aims to investigate the interactions of solitons with an external force within the framework of the Schamel equation, both asymptotically and numerically. By utilizing asymptotic expansions, we demonstrate that the soliton…
Bending of solitons in two dimensional plane is presented in the presence of weak and slowly varying inhomogeneous ion density for the propagation of ion acoustic soliton in unmagnetized cold plasma with isothermal electrons. Using…
The Davydov model of energy transfer in molecular chains is reconsidered assuming the distance dependence of the exciton hopping term. New equations of motion for phonons and excitons are derived within the coherent state approximation.…
The statics, stability and dynamical properties of dark-bright soliton pairs are investigated motivated by applications in a homogeneous system of two-component repulsively interacting Bose-Einstein condensate. One of the intra-species…
The dynamical behavior of matter wave solitons of two-component Bose-Einstein condensates (BEC) in combined linear and nonlinear optical lattices (OLs) is investigated. In particular, the dependence of the frequency of the oscillating…
We investigate the dynamics of the sine-Gordon solitons perturbed by spatiotemporal external forces. We prove the existence of internal (shape) modes of sine-Gordon solitons when they are in the presence of inhomogeneous space-dependent…
The approach for the description of the DNA conformational transformations on the mesoscopic scales in the frame of the double helix is presented. Due to consideration of the joint motions of DNA structural elements along the conformational…
Parity-time (PT) symmetry has attracted a lot of attention since the concept of pseudo-Hermitian dynamics of open quantum systems was first demonstrated two decades ago. Contrary to their Hermitian counterparts, non-conservative…
The aim of this paper is to study the stability of soliton-like static solutions via non-linear simulations in the context of a special class of massive tensor-multi-scalar-theories of gravity whose target space metric admits Killing…
In this work, it is shown that electrostatic solitons in a plasma with turbulent heating of the electrons through an accelerating electric field can form with very high velocities, reaching up to several order of magnitudes larger than the…