Related papers: Solitons in alpha-helical proteins
Nucleic acids have been regarded as stiff polymers with long-range flexibility and generally modeled using elastic rod models of polymer physics. Notwithstanding, investigations carried out over the past few years on single fragments of…
It is demonstrated that under common conditions a molecular solid subject to Jahn-Teller interactions supports stable Q-ball-like non-topological solitons. Such solitons represent a localized lump of excess electric charge in periodic…
Galaxies and the dark matter halos that host them are not spherically symmetric, yet spherical symmetry is a helpful simplifying approximation for idealised calculations and analysis of observational data. The assumption leads to an exact…
We consider an array of double oligomers in an optical waveguide device. A mathematical model for the system is the coupled discrete nonlinear Schr\"odinger (NLS) equations, where the gain-and-loss parameter contributes to the…
The instabilities observed in direct numerical simulations of the Gross-Neveu equation under linear and harmonic potentials are studied. The Lakoba algorithm, based on the method of characteristics, is performed to numerically obtain the…
We analyze two-component spatial optical vortex solitons supported by parametric wave mixing processes in a nonlinear bulk medium. We study two distinct cases of such localised waves, namely, parametric vortex solitons due to phase-matched…
Roughly speaking a solitary wave is a solution of a field equation whose energy travels as a localised packet and which preserves this localisation in time. A soliton is a solitary wave which exhibits some strong form of stability so that…
We show that the presence of soliton in a single-species condensate, at zero temperature, enhances the quantum depletion sufficient enough to induce dynamical instability of the system. We also predict that for two-species condensates, two…
Dislocations, as topological defects in crystal lattices, are fundamental to understanding plasticity in materials. Similar periodic structures also arise in continuum field theories, such as chiral soliton lattices (CSLs), which appear in…
Dynamical topological solitons are studied in classical two-dimensional Heisenberg easy-axis ferromagnets. The properties of such solitons are treated both analytically in the continuum limit and numerically by spin dynamics simulations of…
The different superfluid phases of $^3$He are described by $p$-wave order parameters that include anisotropy axes both in the orbital and spin spaces. The anisotropy axes characterize the broken symmetries in these macroscopically coherent…
We show that bimodal systems with a spatially nonuniform defocusing cubic nonlinearity, whose strength grows toward the periphery, can support stable two-component solitons. For a sufficiently strong XPM interaction, vector solitons with…
Dispersive PDEs are important both in applications (wave phenomena e.g. in hy- drodynamics, nonlinear optics, plasma physics, Bose-Einstein condensates,...) and a mathematically very challenging class of partial differential equations,…
We study the formation and the dynamics of vortex lines in rotating scalar dark matter halos, focusing on models with quartic repulsive self-interactions. In the nonrelativistic regime, vortex lines and their lattices arise from the…
From protein motifs to black holes, topological solitons are pervasive nonlinear excitations that are robust and can be driven by external fields. So far, existing driving mechanisms all accelerate solitons and antisolitons in opposite…
Intrinsically disordered proteins (IDPs) do not possess well-defined three-dimensional structures in solution under physiological conditions. We develop all-atom, united-atom, and coarse-grained Langevin dynamics simulations for the IDP…
A new approach to the perturbative analysis of dynamical systems, which can be described approximately by soliton solutions of integrable nonlinear wave equations, is employed in the case of small-amplitude solutions of the ion acoustic…
We present a new type of soliton solutions in nonlinear photonic systems with discrete point-symmetry. These solitons have their origin in a novel mechanism of breaking of discrete symmetry by the presence of nonlinearities. These so-called…
We experimentally investigate the dynamics of spin solitary waves (magnetic solitons) in a harmonically trapped, binary superfluid mixture. We measure the in-situ density of each pseudospin component and their relative local phase via an…
We show that in superfluids with fermionic imbalance and uniform ground state, there are stable solitons. These solutions are formed of radial density modulations resulting in nodal rings. We demonstrate that these solitons exhibit…