Related papers: Solitons in alpha-helical proteins
This article offers a comprehensive survey of results obtained for solitons and complex nonlinear wave patterns supported by purely nonlinear lattices (NLs), which represent a spatially periodic modulation of the local strength and sign of…
We investigate the formation, stability, and dynamics of solitons in a one-dimensional binary Bose-Einstein condensate under the action of the spin-orbit-coupling (SOC) and Lee-Huang-Yang (LHY) correction to the underlying system of the…
Motivated by experimental and numerical studies revealing that discoidal high-density lipoprotein (HDL) particles may adopt flat elliptical and nonplanar saddle-like configurations, it is hypothesized that these might represent stabilized…
Inspired by one--dimensional light--particle systems, the dynamics of a non-Hamiltonian system with long--range forces is investigated. While the molecular dynamics does not reach an equilibrium state, it may be approximated in the…
An overview is given of basic models combining discreteness in their linear parts (i.e. the models are built as dynamical lattices) and nonlinearity acting at sites of the lattices or between the sites. The considered systems include the…
We study the dynamics of solitons under the action of one-dimensional quasiperiodic lattice potentials, fractional diffraction, and nonlinearity. The formation and stability of the solitons is investigated in the framework of the fractional…
Nucleic acids physical properties have been investigated by theoretical methods based both on fully atomistic representations and on coarse grained models, e.g. the worm-like-chain, taken from polymer physics. In this article, I present an…
Dynamics of solitons of the Ablowitz-Ladik model in the presence of a random potential is studied. In absence of the random potential it is an integrable model and the solitons are stable. As a result of the random potential this stability…
A model of the optical media with a spatially structured Kerr nonlinearity is introduced. The nonlinearity strength is modulated by a set of singular peaks on top of a self-focusing or defocusing uniform background. The peaks may include a…
In this work, we consider the stability of solitons for the KdV equation below the energy space, using spatially-exponentially-weighted norms. Using a combination of the $I$-method and spectral analysis following Pego and Weinstein, we are…
Solitons are localised wave disturbances that propagate without changing shape, a result of a nonlinear interaction which compensates for wave packet dispersion. Individual solitons may collide, but a defining feature is that they pass…
We introduce discrete multivortex solitons in a ring of nonlinear oscillators coupled to a central site. Regular clusters of discrete vortices appear as a result of mode collisions and we show that their stability is determined by global…
We introduce a model for the condensate of dipolar atoms or molecules, in which the dipole-dipole interaction (DDI) is periodically modulated in space, due to a periodic change of the local orientation of the permanent dipoles, imposed by…
The problem of soliton-soliton force is revisited. From the exact two solitons solution of a nonautonomous Gross-Pitaevskii equation, we derive a generalized formula for the mutual force between two solitons. The force is given for…
By means of extensive replica-exchange simulations of generic coarse-grained models for helical polymers, we systematically investigate the structural transitions into all possible helical phases for flexible and semiflexible elastic…
The equations for strands of rigid charge configurations interacting nonlocally are formulated on the special Euclidean group, SE(3), which naturally generates helical conformations. Helical stationary shapes are found by minimizing the…
Elastic collisions of solitons generally have a finite phase shift. When the phase shift has a finitely large value, the two vertices of the (2+1)-dimensional 2-soliton are significantly separated due to the phase shift, accompanied by the…
The main objective of this thesis has been to analyse soliton dynamics in detail, with special attention paid to the role of the internal modes associated with these configurations. Specifically, the thesis has focused on the study of one-…
We investigate the formation and interaction of solitons in the non-integrable Ostrovsky equation characterized by anomalous (positive) dispersion. This equation is relevant for describing wave phenomena in various media, including plasma,…
We present a one-parameter family of mathematical models describing the dynamics of polarons in linear periodic structures such as polypeptides. By tuning the parameter, we are able to recover the Davydov and the Scott models. We describe…