Related papers: Long range correlations in DNA : scaling propertie…
We study the effects of short- and long-range correlations on the charge radii of Ca isotopes. We start our investigation with an independent particle model consisting in Hartree-Fock plus Bardeen-Cooper-Schrieffer calculations with…
The current - voltage dependence of the transverse tunneling current through the electron or hole traps in a DNA is investigated. The hopping of the charge between the sites of the trap and the charge-phonon coupling results in a staircase…
In order to associate complex traits with genetic polymorphisms, genome-wide association studies process huge datasets involving tens of thousands of individuals genotyped for millions of polymorphisms. When handling these datasets, which…
We show that the difference resonance driven by the space charge pseudo-octupole of high-intensity beams not only couples the beam core emittances; it can also lead to emittance exchange in the beam halo, which is of relevance for beam loss…
We study the phase transition phenomena for long-range oriented percolation and contact process. We studied a contact process in which the range of each vertex are independent, updated dynamically and given by some distribution $N$. We also…
In this work, we model the zero-bias conductance for the four different DNA strands that were used in conductance measurement experiment [A. K. Mahapatro, K. J. Jeong, G. U. Lee, and D. B. Janes, Nanotechnology 18, 195202 (2007)]. Our…
The study of correlation structure in the primary sequences of DNA is reviewed. The issues reviewed include: symmetries among 16 base-base correlation functions, accurate estimation of correlation measures, the relationship between $1/f$…
Horizontal gene transfer inference approaches are usually based on gene sequences: parametric methods search for patterns that deviate from a particular genomic signature, while phylogenetic methods use sequences to reconstruct the gene and…
A discrete nonlinear Schrodinger (NLS) model with long-range dispersive interactions describing the dynamical structure of DNA is proposed. Dispersive interactions of two types: the power dependence $r^{-s}$ and the exponential dependence…
This paper presents and compares alternative transfer learning methods that can increase the power of conditional testing via knockoffs by leveraging prior information in external data sets collected from different populations or measuring…
Some of the recent developments concerning the propagation of quantum correlations across spin channels are reviewed. In particular, we focus on the improvement of the transport efficiency obtained by the manipulation of few energy…
The coupling constant dependence is derived in time-dependent {\em current} density functional theory. The scaling relation can be used to check approximate functionals and in conjunction with the adiabatic connection formula to obtain the…
With the development of high throughput sequencing technology, it becomes possible to directly analyze mutation distribution in a genome-wide fashion, dissociating mutation rate measurements from the traditional underlying assumptions.…
We study a minimal model for genome evolution whose elementary processes are single site mutation, duplication and deletion of sequence regions and insertion of random segments. These processes are found to generate long-range correlations…
Longitudinal charge profile measurements or bunch shape measurements is a challenge for temporally short non-relativistic bunches. The field profile has a larger longitudinal extent compared to the charge profile for such beams. This…
The coherent energy transfer between two quantum devices (a quantum charger and a quantum battery) mediated by a photonic cavity is investigated, in presence of dissipative environments, with particular focus on the the ultrastrong coupling…
Several recent studies have dealt with the effects of short range correlations on the momentum distribution of nucleons in nuclei. Here we investigate the correlation effects on the density and spectral distribution in coordinate space. A…
We illuminate the influence of transition mutations and disorder on charge localization and transfer along B-DNA sequences. Homopolymers are the best for charge transfer (cf. Refs.~ \cite{LVBMS:2018, MLTS:2019}). Hence, we consider as…
We consider force-induced unzipping transition for a heterogeneous DNA model with a long-range correlated base-sequence. It is shown that as compared to the uncorrelated situation, long-range correlations smear the unzipping…
We propose a dynamical model depicting the interactions between DNA and a specific binding protein involving long range transmissions. The dynamics rely on the coupling between Hydrogen bonds formed between DNA and protein and between the…