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In order to conduct a statistical analysis on a given set of phylogenetic gene trees, we often use a distance measure between two trees. In a statistical distance-based method to analyze discordance between gene trees, it is a key to decide…

Populations and Evolution · Quantitative Biology 2016-02-05 Jing Xi , Jin Xie , Ruriko Yoshida

We present a link-by-link rule-based method for constructing all members of the ensemble of spanning trees for any recursively generated, finitely articulated graph, such as the DGM net. The recursions allow for many large-scale properties…

Physics and Society · Physics 2022-03-14 C. Tyler Diggans , Erik M. Bollt , Daniel ben-Avraham

We prove that the uniform unlabelled unrooted tree with n vertices and vertex degrees in a fixed set converges in the Gromov-Hausdorff sense after a suitable rescaling to the Brownian continuum random tree. This proves a conjecture by…

Probability · Mathematics 2016-12-15 Benedikt Stufler

One of the goals of the landscape program in string theory is to extract information about the space of string vacua in the form of statistical correlations between phenomenological features that are otherwise uncorrelated in field theory.…

High Energy Physics - Theory · Physics 2008-11-26 Keith R. Dienes , Michael Lennek , David Sénéchal , Vaibhav Wasnik

We study the evolution of a random graph under the constraint that the diameter remain constant as the graph grows. We show that if the graph maintains the form of its link distribution it must be scale-free with exponent between 2 and 3.…

Statistical Mechanics · Physics 2007-05-23 Amit Puniyani , Rajan Lukose

We investigate the statistics of the most connected nodes in scale-free networks. For a scale-free network model with homogeneous nodes, we show by means of extensive simulations that the exponential truncation--due to the finite size of…

Disordered Systems and Neural Networks · Physics 2007-05-23 Andre Auto Moreira , Jose Soares de Andrade , Luis A. Nunes Amaral

Scale-free percolation is a percolation model on $\mathbb{Z}^d$ which can be used to model real-world networks. We prove bounds for the graph distance in the regime where vertices have infinite degrees. We fully characterize transience vs.…

Probability · Mathematics 2018-01-11 Markus Heydenreich , Tim Hulshof , Joost Jorritsma

We propose a general geometric growth model for pseudofractal scale-free web, which is controlled by two tunable parameters. We derive exactly the main characteristics of the networks: degree distribution, second moment of degree…

Statistical Mechanics · Physics 2007-05-23 Zhongzhi Zhang , Lili Rong , Shuigeng Zhou

We derive the finite size dependence of the clustering coefficient of scale-free random graphs generated by the configuration model with degree distribution exponent $2<\gamma<3$. Degree heterogeneity increases the presence of triangles in…

Disordered Systems and Neural Networks · Physics 2015-06-05 Pol Colomer-de-Simon , Marian Boguna

We study a random fragmentation process and its associated random tree. The process has earlier been studied by Dean and Majumdar (J. Phys. A: Math. Gen., vol. 35, L501--L507), who found a phase transition: the number of fragmentations is…

Probability · Mathematics 2007-05-23 S. Janson , R. Neininger

The growth of ballistic aggregates on deterministic fractal substrates is studied by means of numerical simulations. First, we attempt the description of the evolving interface of the aggregates by applying the well-established…

Statistical Mechanics · Physics 2009-11-13 Claudio M. Horowitz , Federico Roma , Ezequiel V. Albano

Using generating functions techniques we develop a relation between the Hausdorff and spectral dimension of trees with a unique infinite spine. Furthermore, it is shown that if the outgrowths along the spine are independent and identically…

Statistical Mechanics · Physics 2012-06-22 Sigurdur Orn Stefansson , Stefan Zohren

The statistical property of a growing scale-free network is studied based on an earlier model proposed by Krapivsky, Rodgers, and Redner [Phys. Rev. Lett. 86, 5401 (2001)], with the additional constraints of forbidden of self-connection and…

Statistical Mechanics · Physics 2016-08-31 Haijun Zhou

We investigate the random continuous trees called L\'evy trees, which are obtained as scaling limits of discrete Galton-Watson trees. We give a mathematically precise definition of these random trees as random variables taking values in the…

Probability · Mathematics 2007-05-23 Thomas Duquesne , Jean-Francois Le Gall

We analyse the statistical properties of genealogical trees in a neutral model of a closed population with sexual reproduction and non-overlapping generations. By reconstructing the genealogy of an individual from the population evolution,…

Condensed Matter · Physics 2009-10-31 Bernard Derrida , Susanna C. Manrubia , Damian H. Zanette

The origin of scale-free degree distributions in the context of networks is addressed through an analogous non-network model in which the node degree corresponds to the number of balls in a box and the rewiring of links to balls moving…

Statistical Mechanics · Physics 2011-11-09 Petter Minnhagen , Sebastian Bernhardsson , Beom Jun Kim

We compute a number of distance-dependent universal scaling functions characterizing the distance statistics of large maps of genus one. In particular, we obtain explicitly the probability distribution for the length of the shortest…

Mathematical Physics · Physics 2010-07-01 E. Guitter

We present a statistical mechanics approach for the description of complex networks. We first define an energy and an entropy associated to a degree distribution which have a geometrical interpretation. Next we evaluate the distribution…

Disordered Systems and Neural Networks · Physics 2009-11-13 Ginestra Bianconi

A good generalization of the Euclidean dimension to disordered systems and non crystalline structures is commonly required to be related to large scale geometry and it is expected to be independent of local geometrical modifications. The…

Statistical Mechanics · Physics 2009-10-30 Raffaella Burioni , Davide Cassi

Activity or spin patterns on random scale-free network are studied by mean field analysis and computer simulations. These activity patterns evolve in time according to local majority-rule dynamics which is implemented using (i) parallel or…

Disordered Systems and Neural Networks · Physics 2007-05-23 Haijun Zhou , Reinhard Lipowsky
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