English

Distributions of topological tree metrics between a species tree and a gene tree

Populations and Evolution 2016-02-05 v2

Abstract

In order to conduct a statistical analysis on a given set of phylogenetic gene trees, we often use a distance measure between two trees. In a statistical distance-based method to analyze discordance between gene trees, it is a key to decide "biological meaningful" and "statistically well-distributed" distance between trees. Thus, in this paper, we study the distributions of the three tree distance metrics: the edge difference, the path difference, and the precise KK interval cospeciation distance, between two trees: first, we focus on distributions of the three tree distances between two random unrooted trees with nn leaves (n4n \geq 4); and then we focus on the distributions the three tree distances between a fixed rooted species tree with nn leaves and a random gene tree with nn leaves generated under the coalescent process with given the species tree. We show some theoretical results as well as simulation study on these distributions.

Keywords

Cite

@article{arxiv.1501.02374,
  title  = {Distributions of topological tree metrics between a species tree and a gene tree},
  author = {Jing Xi and Jin Xie and Ruriko Yoshida},
  journal= {arXiv preprint arXiv:1501.02374},
  year   = {2016}
}

Comments

18 pages, 11 figures