Related papers: Virus shapes and buckling transitions in spherical…
A structure model of atoms of two sizes, interacting with Lennard-Jones potentials and simulated by molecular dynamics, was observed to freeze into a decagonal quasicrystal dominated by Frank-Kasper coordination shells and closely related…
We study theoretically the shapes of biological tubes affected by various pathologies. When epithelial cells grow at an uncontrolled rate, the negative tension produced by their division provokes a buckling instability. Several shapes are…
The shape transformations of fluid membranes induced by curved protein rods are studied using meshless membrane simulations. The rod assembly at low rod density induces a flat membrane tube and oblate vesicle. It is found that the…
The shape deformation of a three-dimensional axisymmetric vesicle with encapsulated filaments or impurities is analyzed by integrating a dissipation dynamics. This method can incorporate systematically the constraint of a fixed surface area…
We show scalar-mean curvature rigidity of warped products of round spheres of dimension at least 2 over compact intervals equipped with strictly log-concave warping functions. This generalizes earlier results of Cecchini-Zeidler to all…
Dense packings composed of irregular polyhedral particles are investigated by numerical simulations under quasistatic triaxial compression. The Contact Dynamics method is used for this investigation with 40 000 particles. The effect of…
Since the lipid raft model was developed at the end of the last century, it became clear that the specific molecular arrangements of phospholipid assemblies within a membrane have profound implications in a vast range of physiological…
We analyzed folding routes predicted by a variational model in terms of a generalized formalism of the capillarity scaling theory for 28 two-state proteins. The scaling exponent ranged from 0.2 to 0.45 with an average of 0.33. This average…
We investigate the structural, vibrational, and mechanical properties of jammed packings of deformable particles with shape degrees of freedom in three dimensions (3D). Each 3D deformable particle is modeled as a surface-triangulated…
The self-assembly of polyhedral shells, each constructed from 60 trapezoidal particles, is simulated using molecular dynamics. The spatial organization of the component particles in this shell is similar to the capsomer proteins forming the…
When a spherical elastic capsule is deflated, it first buckles axisymmetrically and subsequently loses its axisymmetry in a secondary instability, where the dimple acquires a polygonal shape. We explain this secondary polygonal buckling in…
Inertial cavitation in soft matter is an important phenomenon featured in a wide array of biological and engineering processes. Recent advances in experimental, theoretical, and numerical techniques have provided access into a world full of…
Thin elastic sheets bend easily, leading to mechanical instabilities such as wrinkling. Here, we investigate wrinkles at edges of bi-strips, which consist of two thin sheets, one that swells and one that does not, joined side-by-side. It is…
We investigate the properties of forced inertial modes of a rotating fluid inside a spherical shell. Our forcing is tidal like, but its main property is that it is on the large scales. Our solutions first confirm some analytical results…
The equations of a planar elastica under pressure can be rewritten in a useful form by parametrising the variables in terms of the local orientation angle, $\theta$, instead of the arc length. This ``$\theta$-formulation'' lends itself to a…
Macroscopic elastic core-shell systems can be generated as toy models to be deformed and haptically studied by hand. On the mesoscale, colloidal core-shell particles and microgels are fabricated and investigated by different types of…
To advance Thomson problem we generalize physical principles suggested by Caspar and Klug (CK) to model icosahedral capsids. Proposed simplest distortions of the CK spherical arrangements yield new-type trial structures very close to the…
Studies of a class of infinite one dimensional self-gravitating systems have highlighted that, on the one hand, the spatial clustering which develops may have scale invariant (fractal) properties, and, on the other, that they display…
Using $\Gamma$-convergence arguments, we construct a nonlinear membrane-like Cosserat shell model on a curvy reference configuration starting from a geometrically nonlinear, physically linear three-dimensional isotropic Cosserat model. Even…
Motivated by experimental and numerical studies revealing that discoidal high-density lipoprotein (HDL) particles may adopt flat elliptical and nonplanar saddle-like configurations, it is hypothesized that these might represent stabilized…