Related papers: Knot Probability for Self-Avoiding Loops on a Cubi…
We introduce several bilocal algorithms for lattice self-avoiding walks that provide reasonable models for the physical kinetics of polymers in the absence of hydrodynamic effects. We discuss their ergodicity in different confined…
We investigate the kinetics of loop formation in flexible ideal polymer chains (Rouse model), and polymers in good and poor solvents. We show for the Rouse model, using a modification of the theory of Szabo, Schulten, and Schulten, that the…
A prototypical problem on which techniques for exact enumeration are tested and compared is the enumeration of self-avoiding walks. Here, we show an advance in the methodology of enumeration, making the process thousands or millions of…
We report extensive simulations of the relaxation dynamics of a self-avoiding polymer confined inside a cylindrical pore. In particular, we concentrate on examining how confinement influences the scaling behavior of the global relaxation…
Let D be a domain in the plane containing the origin. We are interested in the ensemble of self-avoiding walks (SAW's) in D which start at the origin and end on the boundary of the domain. We introduce an ensemble of SAW's that we expect to…
Motivated by recent claims of a proof that the length scale exponent for the end-to-end distance scaling of self-avoiding walks is precisely $7/12=0.5833...$, we present results of large-scale simulations of self-avoiding walks and…
The statistics of a long closed self-avoiding walk (SAW) or polymer ring on a $ d $-dimensional lattice obeys hyperscaling. The combination $ p_N \left\langle R^2 \right\rangle^{ d/2}_N\mu^{ -N}, $ (where $ p_N $ is the number of…
We consider random paths on a square lattice which take a left or a right turn at every vertex. The possible turns are taken with equal probability, except at a vertex which has been visited before. In such case the vertex is left via the…
We simulate long self-avoiding chains using a weighted-biased sampling Monte-Carlo algorithm, and compute the probabilities for chain looping with and without a protrusion. We find that a protrusion near one of the chain's termini reduces…
Various subsets of self-avoiding walks naturally appear when investigating existing methods designed to predict the 3D conformation of a protein of interest. Two such subsets, namely the folded and the unfoldable self-avoiding walks, are…
We study knots in $\mathbb{S}^3$ obtained by the intersection of a minimal surface in $\mathbb{R}^4$ with a small 3-sphere centered at a branch point. We construct examples of new minimal knots. In particular we show the existence of…
Quark number susceptibility on the lattice, obtained by merely adding a $\mu N$ term with $\mu$ as the chemical potential and $N$ as the conserved quark number, has a quadratic divergence in the cut-off $a$. We show that such a divergence…
We study the correction-to-scaling exponents for the two-dimensional self-avoiding walk, using a combination of series-extrapolation and Monte Carlo methods. We enumerate all self-avoiding walks up to 59 steps on the square lattice, and up…
The statistical mechanics of a long knotted collapsed polymer is determined by a free-energy with a knot-dependent subleading term, which is linked to the length of the shortest polymer that can hold such knot. The only other parameter…
We show that the number of distinct topological states associated to a given knotted defect, $L$, in a nematic liquid crystal is equal to the determinant of the link $L$. We give an interpretation of these states, demonstrate how they may…
Recently Beaton, de Gier and Guttmann proved a conjecture of Batchelor and Yung that the critical fugacity of self-avoiding walks interacting with (alternate) sites on the surface of the honeycomb lattice is $1+\sqrt{2}$. A key identity…
We examine simulations of the formation of domain walls, cosmic strings, and monopoles on a cubic lattice, in which the topological defects are assumed to lie at the zeros of a piecewise constant 1, 2, or 3 component Gaussian random field,…
We study the dynamics of a knot in a semiflexible polymer confined to a narrow channel of width comparable to the polymers' persistence length. Using a combination of Brownian dynamics simulations and a coarse-grained stochastic model, we…
We have analyzed geometric and topological features of self-avoiding walks. We introduce a new kind of walk: the loop-deleted self-avoiding walk (LDSAW) motivated by the interaction of chromatin with the nuclear lamina. Its critical…
An observation of autocorrelation of Wilson loops on lattice is presented, especially for the small seperation in Markov chain. We give a possible explanation for such behavior. We also present the dependence of autocorrelation behavior on…