Computational investigations of folded self-avoiding walks related to protein folding
Biomolecules
2013-06-19 v1 Biological Physics
Abstract
Various subsets of self-avoiding walks naturally appear when investigating existing methods designed to predict the 3D conformation of a protein of interest. Two such subsets, namely the folded and the unfoldable self-avoiding walks, are studied computationally in this article. We show that these two sets are equal and correspond to the whole -step self-avoiding walks for , but that they are different for numerous , which are common protein lengths. Concrete counterexamples are provided and the computational methods used to discover them are completely detailed. A tool for studying these subsets of walks related to both pivot moves and proteins conformations is finally presented.
Keywords
Cite
@article{arxiv.1306.4270,
title = {Computational investigations of folded self-avoiding walks related to protein folding},
author = {Jacques M. Bahi and Christophe Guyeux and Kamel Mazouzi and Laurent Philippe},
journal= {arXiv preprint arXiv:1306.4270},
year = {2013}
}
Comments
Not yet submitted