Related papers: Structure optimization in an off-lattice protein m…
The periodic Anderson model (PAM) captures the essential physics of heavy fermion materials. Yet even for the paramagnetic metallic phase, a practicable many-body theory that can simultaneously handle all energy scales while respecting the…
We study the ground-state properties of a family of frustrated spin-1/2 Heisenberg models on two- and three-dimensional decorated lattices composed of connected star-shaped units. Each star is built from edge-sharing triangles with an…
We study the honeycomb lattice $t$-$J$ model using the fermionic tensor network approach. By examining the ansatz with various unit cells, we discover several different stripe states with different periods that compete strongly with uniform…
We apply the Tensor-Backflow method to investigate the Fermi-Hubbard model on two-dimensional lattices up to 256 sites, exploring various interaction strengths $U$, electron fillings $n$, next-nearest-neighbor hopping $t'$, and boundary…
We consider two types of Go models of a protein (crambin) and study their kinetics through molecular dynamics simulations. In the first model, the residue -- residue contact interactions are selected based on a cutoff distance, $R_c$,…
Many convex optimization problems with important applications in machine learning are formulated as empirical risk minimization (ERM). There are several examples: linear and logistic regression, LASSO, kernel regression, quantile…
We present a tree-tensor-network-based method to study strongly correlated systems with nonlocal interactions in higher dimensions. Although the momentum-space and quantum-chemistry versions of the density matrix renormalization group…
We present a detailed study of the performance and reliability of design procedures based on energy minimization. The analysis is carried out for model proteins where exact results can be obtained through exhaustive enumeration. The…
We study a two species fermion mixture with different populations on a square lattice modeled by a Hubbard Hamiltonian with on-site inter-species repulsive interaction. Such a model can be realized in a cold atom system with fermionic atoms…
The antiferromagnetic three-state Potts model on the simple-cubic lattice is studied using Monte Carlo simulations. The ordering in a medium temperature range below the critical point is investigated in detail. Two different regimes have…
A review of the properties that bond the particles under Lennard Jones Potential allow to states properties and conditions for building evolutive algorithms using the CB lattice with other different lattices. The new lattice is called CB…
We study the ground-state properties of ultracold bosonic atoms in a state-dependent graphene-like honeycomb optical lattice, where the degeneracy between the two triangular sublattices A and B can be lifted. We discuss the various…
The sequence of ground state energy density at finite size, e_{L}, provides much more information than usually believed. Having at disposal e_{L} for short lattice sizes, we show how to re-construct an approximate quasi-particle dispersion…
DNA-coated colloids are a popular model system for self-assembly through tunable interactions. The DNA-encoded linkages between particles theoretically allow for very high specificity, but generally no directionality or long-range…
A new lattice protein model with a four-helix bundle ground state is analyzed by a parameter-space Monte Carlo histogram technique to evaluate the effects of an extensive variety of model potentials on folding thermodynamics. Cooperative…
We consider a one-dimensional classical many-body system with interaction potential of Lennard-Jones type in the thermodynamic limit at low temperature $1/\beta\in(0,\infty)$. The ground state is a periodic lattice. We show that when the…
We simulate a finite system of $N$ confined electrons with inclusion of the Darwin magnetic interaction in two- and three-dimensions. The lowest energy states are located using the steepest descent quenching adapted for velocity dependent…
We investigate the ground state of a one-dimensional lattice system that hosts two different kinds of excitations (species) which interact with a power-law potential. Interactions are only present between excitations of the same kind and…
Studying evolutionary correlations in alignments of homologous sequences by means of an inverse Potts model has proven useful to obtain residue-residue contact energies and to predict contacts in proteins. The quality of the results depend…
We numerically study the random-hopping fermions (the Cruetz ladder) with repulsion and investigate how the interactions deform localized eigenstates by means of the one particle-density matrix (OPDM). The ground state exhibits resurgence…