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We analyze solutions of strongly charged chains bridged by linkers such as multivalent ions. The gelation induced by the strong short range electrostatic attractions is dramatically suppressed by the long range electrostatic correlations…

Condensed Matter · Physics 2009-11-07 A. V. Ermoshkin , M. Olvera de la Cruz

Shape transformations in driven and damped molecular chains are considered. Closed chains of weakly coupled molecular subunits under the action of spatially homogeneous time-periodic external field are studied. The coupling between the…

Pattern Formation and Solitons · Physics 2016-07-01 Yuri B. Gaididei , Juan F. R. Archilla , Víctor J. Sánchez-Morcillo , Carlos Gorria

The competition between toroidal and rod-like conformations as possible ground states for DNA condensation is studied as a function of the stiffness, the length of the DNA and the form of the long-range interactions between neighboring…

A model for two-dimensional colloids confined laterally by "structured boundaries" (i.e., ones that impose a periodicity along the slit) is studied by Monte Carlo simulations. When the distance D between the confining walls is reduced at…

Statistical Mechanics · Physics 2012-03-09 Dorothea Wilms , Nigel B. Wilding , Kurt Binder

We generalize the concept of charge regulation of ionic solutions, and apply it to complex fluids with mobile macro-ions having internal non-electrostatic degrees of freedom. The suggested framework provides a convenient tool for…

Soft Condensed Matter · Physics 2018-01-17 Tomer Markovich , David Andelman , Rudi Podgornik

We perform extensive molecular dynamics simulations of a charged polymer in a good solvent in the regime where the chain is collapsed. We analyze the dependence of the gyration radius $R_g $ on the reduced Bjerrum length $\ell_B$ and find…

Soft Condensed Matter · Physics 2016-10-05 Anvy Moly Tom , Satyavani Vemparala , R. Rajesh , Nikolai V. Brilliantov

Rigid particles pack into structures, such as sand dunes on the beach, whose overall stability is determined by the average number of contacts between particles. However, when packing spatially extended objects with flexible shapes,…

Soft Condensed Matter · Physics 2009-11-13 Ling-Nan Zou , Xiang Cheng , Mark L. Rivers , Heinrich M. Jaeger , Sidney R. Nagel

Electrostatic interactions between macroions largely govern the equilibrium thermodynamic and dynamical properties of charge-stabilized colloidal suspensions and polyelectrolyte solutions. Predicting the properties of such complex,…

Soft Condensed Matter · Physics 2012-12-11 Alan R. Denton

Ion distributions in dilute polyelectrolyte solutions are studied by means of Langevin dynamics simulations. We show that the distributions depend on the conformation of a chain while the conformation is determined by the chain stiffness…

Soft Condensed Matter · Physics 2015-05-14 Yu-Fu Wei , Pai-Yi Hsiao

Many-electron systems confined to a quasi-1D geometry by a cylindrical distribution of positive charge have been investigated by density functional computations in the unrestricted local spin density approximation. Our investigations have…

Mesoscale and Nanoscale Physics · Physics 2010-08-27 R. Cortes-Huerto M. Paternostro P. Ballone

Conformational properties of a single flexible polyelectrolyte chain in a poor solvent are studied using constant temperature molecular dynamics simulation. The effects of counterions are explicitly taken in to account. Structural…

Statistical Mechanics · Physics 2012-12-04 Anoop Varghese , Satyavani Vemparala , R. Rajesh

Past models of stress-strain response under cyclic loading mainly rely on macroscopic equations which consider microstructure evolution indirectly or simply discard microstructure information. Modern materials science, on the other hand,…

Materials Science · Physics 2018-08-31 Ronghai Wu , Michael Zaiser

For single-file translocations of a charged macromolecule through a narrow pore, the crucial step of arrival of an end at the pore suffers from free energy barriers, arising from changes in intrachain electrostatic interaction, distribution…

Soft Condensed Matter · Physics 2015-05-14 Rajeev Kumar , M. Muthukumar

The ferroelectric polarization of perovskite oxides is much larger than implied by displacement of static ionic charges. We use an explicitly correlated scheme to investigate the phenomenon; charge transport is evaluated as a geometric…

Condensed Matter · Physics 2012-07-07 R. Resta , S. Sorella

An ensemble of directed macromolecules on a lattice is considered, where the constituting molecules are chosen as a random sequence of N different types. The same type of molecules experiences a hard-core (exclusion) interaction. We study…

Biomolecules · Quantitative Biology 2009-11-10 Christopher Moseley , Klaus Ziegler

Effective electrostatic interactions between colloidal particles, coated with polyelectrolyte brushes and suspended in an electrolyte solvent, are described via linear response theory. The inner cores of the macroions are modeled as hard…

Soft Condensed Matter · Physics 2009-11-10 Hao Wang , Alan R. Denton

We present an overview of our understanding of electrostatic interactions between charged macromolecular surfaces mediated by mobile counter- and coions. The dichotomy between the weak and the strong coupling regimes is described in detail…

Soft Condensed Matter · Physics 2016-12-21 Ali Naji , Matej Kanduc , Roland R. Netz , Rudolf Podgornik

We study the structure of complexes formed between ionic surfactants (SF) and a single oppositely charged polyelectrolyte (PE) chain. For our computer simulation we use the ``primitive'' electrolyte model: while the polyelectrolyte is…

Soft Condensed Matter · Physics 2015-06-24 C. von Ferber , H. Lowen

The structural diversity of the solute molecules involved in biomolecular processes necessitates the characterization of the forces between charged macromolecules beyond the point-ion description. From the field theoretic partition function…

Soft Condensed Matter · Physics 2023-06-22 Sahin Buyukdagli

Constant temperature molecular dynamics simulations were used to study solutions of flexible polyelectrolyte chains at nonzero concentrations with explicit counterions and unscreened coulombic interactions. Counterion condensation, measured…

Statistical Mechanics · Physics 2009-10-31 J. C. Chu , C. H. Mak
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