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We present a new simulation technique to study systems of polymers functionalized by reactive sites that bind/unbind forming reversible linkages. Functionalized polymers feature self-assembly and responsive properties that are unmatched by…

Soft Condensed Matter · Physics 2018-04-18 Bernardo Oyarzún , Bortolo Matteo Mognetti

We study the $t{-}V$ disordered spinless fermionic chain in the strong coupling regime, $t/V\rightarrow 0$. Strong interactions highly hinder the dynamics of the model, fragmenting its Hilbert space into exponentially many blocks in system…

Disordered Systems and Neural Networks · Physics 2020-01-01 Giuseppe De Tomasi , Daniel Hetterich , Pablo Sala , Frank Pollmann

To study the localization of random heteropolymers at an interface separating two selective solvents within the model of Garel, Huse, Leibler and Orland, Europhys. Lett. {\bf 8} 9 (1989), we propose an approach based on a disorder-dependent…

Condensed Matter · Physics 2015-06-25 Cecile Monthus

We consider a polymer, with monomer locations modeled by the trajectory of a Markov chain, in the presence of a potential that interacts with the polymer when it visits a particular site 0. Disorder is introduced by, for example, having the…

Probability · Mathematics 2007-05-23 Kenneth S. Alexander , Vladas Sidoravicius

A fundamental paradigm in polymer physics is that macromolecular conformations in equilibrium can be described by universal scaling laws, being key for structure, dynamics, and function of soft (biological) matter and in the materials…

Soft Condensed Matter · Physics 2021-09-22 Michael Bley , Upayan Baul , Joachim Dzubiella

We analyze diffusion of small particles in a solid polymeric medium taking into account a short range particle-polymer interaction. The system is modeled by a particle diffusion on a ternary lattice where the sites occupied by polymer…

Statistical Mechanics · Physics 2015-06-11 Federico Camboni , Andreas Koher , Igor M. Sokolov

Trapping macromolecules is impoartant for the study of their conformations, interactions, dynamics and kinetic processes. Here, we develop a variational approach which self-consistently introduces a mean force that controls the…

Soft Condensed Matter · Physics 2024-04-23 Luofu Liu , Chao Duan , Rui Wang

We present a novel and rigorous approach to the Langevin dynamics of ideal polymer chains subject to internal distance constraints. The permanent constraints are modelled by harmonic potentials in the limit when the strength of the…

Soft Condensed Matter · Physics 2009-10-28 M. P. Solf , T. A. Vilgis

We analyze the crystallization and collapse transition of a simple model for flexible polymer chains on simple cubic and face-centered cubic lattices by means of sophisticated chain-growth methods. In contrast to bond-fluctuation polymer…

Soft Condensed Matter · Physics 2009-11-13 Thomas Vogel , Michael Bachmann , Wolfhard Janke

Using a lattice-based Monte Carlo code for simulating self-avoiding flexible polymers in three dimensions in the absence of explicit hydrodynamics, we study their Rouse modes. For self-avoiding polymers, the Rouse modes are not expected to…

Soft Condensed Matter · Physics 2009-10-20 Debabrata Panja , Gerard T. Barkema

We study random heteropolymer chain with gaussian distribution of kinds of monomers. The long-range correlations between kinds of monomers were introduce. The mean-field analysis of such heteropolymer indicates the existence of infinite…

Soft Condensed Matter · Physics 2009-09-25 E. Sh. Mamasakhlisov , V. F. Morozov , M. S. Shahinian

The behavior of mesoscopic particles dissolved in a dilute solution of long, flexible, and nonadsorbing polymer chains is studied by field-theoretic methods. For spherical and cylindrical particles the solvation free energy for immersing a…

Soft Condensed Matter · Physics 2009-10-31 A. Hanke , E. Eisenriegler , S. Dietrich

Active processes in living systems generate nonequilibrium forces that deform embedded passive macromolecules. To understand how such dynamics influence polymer conformation, we study a flexible passive chain in an active nematic fluid.…

Soft Condensed Matter · Physics 2025-09-30 Zahra K. Valei , Davide Marenduzzo , Tyler N. Shendruk

The impact of impenetrable obstacles on the energetics and equilibrium structure of strongly repulsive directed polymers is investigated. As a result of the strong interactions, regions of severe polymer depletion and excess are found in…

Soft Condensed Matter · Physics 2013-08-30 Anton Souslov , D. Zeb Rocklin , Paul M. Goldbart

Quantum simulators of lattice gauge theories involve dynamics of typically short-ranged interacting particles and dynamical fields. Elimination of the latter via Gauss law leads to infinite range interactions as exemplified by the Schwinger…

Disordered Systems and Neural Networks · Physics 2024-06-25 Arindam Mallick , Jakub Zakrzewski

We use molecular dynamics simulations to investigate the microscopic and macroscopic response of model polymer networks to uniaxial elongations. By studying networks with strands lengths ranging from $N_s=20$ to 200 we cover the full…

Soft Condensed Matter · Physics 2009-11-10 Carsten Svaneborg , Gary S. Grest , Ralf Everaers

We analyse the conformational behaviour of a linear semiflexible homo-polymer chain confined by two geometrical constraints under a good solvent condition in two dimensions. The constraints are stair shaped impenetrable surfaces. The…

Soft Condensed Matter · Physics 2014-07-14 Pramod Kumar Mishra

The structure of polymer coils near interfaces between coexisting phases of symmetrical polymer mixtures (AB) is discussed, as well as the structure of symmetric diblock copolymers of the same chain length N adsorbed at the interface. The…

Soft Condensed Matter · Physics 2015-06-25 K. Binder , M. Mueller , F. Schmid , A. Werner

We study systems of active particles, whose perception is constrained by a vision cone, that are attracted to other particles and repelled from static obstacles. We report a novel self-trapping mechanism: active particles with…

Statistical Mechanics · Physics 2024-11-08 Rodrigo Saavedra , Fernando Peruani

Stretched polymers with attractive interaction are studied in two and three dimensions. They are described by biased self-avoiding random walks with nearest neighbour attraction. The bias corresponds to opposite forces applied to the first…

Statistical Mechanics · Physics 2009-11-07 Peter Grassberger , Hsiao-Ping Hsu
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