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The random-cluster model, a correlated bond percolation model, unifies a range of important models of statistical mechanics in one description, including independent bond percolation, the Potts model and uniform spanning trees. By…

Statistical Mechanics · Physics 2016-01-28 Eren Metin Elçi , Martin Weigel , Nikolaos G. Fytas

We construct equilibrium networks by introducing an energy function depending on the degree of each node as well as the product of neighboring degrees. With this topological energy function, networks constitute a canonical ensemble, which…

Statistical Mechanics · Physics 2009-11-13 Daun Jeong , M. Y. Choi , Hyunggyu Park

A family of models of growing hypergraphs with preferential rules of new linking is introduced and studied. The model hypergraphs evolve via the hyperedge-based growth as well as the node-based one, thus generalizing the…

Physics and Society · Physics 2023-09-04 Dahae Roh , Kwang-Il Goh

In evolutionary studies it is common to use phylogenetic trees to represent the evolutionary history of a set of species. However, in case the transfer of genes or other genetic information between the species or their ancestors has…

Combinatorics · Mathematics 2022-02-15 Katharina T. Huber , Vincent Moulton , Guillaume E. Scholz

Phylogenetic trees capture evolutionary relationships among species and reflect the forces that shaped them. While many studies rely on branch length information, the topology of phylogenetic trees (particularly their degree of imbalance)…

Populations and Evolution · Quantitative Biology 2025-10-16 Stephan Kleinbölting , Nigel Goldenfeld , Johannes Berg

We present, for the Ising model on the Cayley tree, some explicit formulae of the free energies (and entropies) according to boundary conditions (b.c.). They include translation-invariant, periodic, Dobrushin-like b.c., as well as those…

Mathematical Physics · Physics 2015-06-12 D. Gandolfo , M. M. Rakhmatullaev , U. A. Rozikov , J. Ruiz

Diversity patterns of tree species in a tropical forest community are approached by a simple lattice model and investigated by Monte Carlo simulations using a backtracking method. Our spatially explicit neutral model is based on a simple…

Populations and Evolution · Quantitative Biology 2015-06-04 A. Derzsi , Z. Neda

A wireless communication network is considered where any two nodes are connected if the signal-to-interference ratio (SIR) between them is greater than a threshold. We consider the the path-loss plus fading model of wireless signal…

Information Theory · Computer Science 2012-05-23 Rahul Vaze

In a previous paper, we showed that a compartmental stochastic process model of SARS-CoV-2 transmission could be fit to time series data and then reinterpreted as a collection of interacting branching processes drawn from a dynamic degree…

Populations and Evolution · Quantitative Biology 2023-11-29 Niket Thakkar , Mike Famulare

For a uniform random labelled tree, we find the limiting distribution of tree parameters which are stable (in some sense) with respect to local perturbations of the tree structure. The proof is based on the martingale central limit theorem…

Combinatorics · Mathematics 2022-06-16 Mikhail Isaev , Angus Southwell , Maksim Zhukovskii

Research on the vulnerability of electric networks with a complex network approach has produced significant results in the last decade, especially for transmission networks. These studies have shown that there are causal relations between…

Physics and Society · Physics 2024-09-11 Bálint Hartmann , Tamás Soha , Michelle T. Cirunay , Tímea Erdei

Trees are a special sub-class of networks with unique properties, such as the level distribution which has often been overlooked. We analyse a general tree growth model proposed by Klemm {\em et. al.} (2005) to explain the growth of…

Statistical Mechanics · Physics 2015-05-13 Markus M. Geipel , Claudio J. Tessone , Frank Schweitzer

A recent theory that determines the properties of disordered solids as the solid accumulates damage is applied to the special case of fiber bundles with global load sharing and is shown to be exact in this case. The theory postulates that…

Statistical Mechanics · Physics 2015-06-24 Steven R. Pride , Renaud Toussaint

We simulate the Lya forest in a standard CDM universe using a 2-level hierarchical grid code to evolve the dark and baryonic matter components self-consistently. We solve the time-dependent ionization equations for hydrogen and helium,…

Astrophysics · Physics 2009-10-28 Yu Zhang , Peter Anninos , Michael L. Norman , Avery Meiksin

Transport through generalized trees is considered. Trees contain the simple nodes and supernodes, either well-structured regular subgraphs or those with many triangles. We observe a superdiffusion for the highly connected nodes while it is…

Disordered Systems and Neural Networks · Physics 2009-11-11 D. Volchenkov , Ph. Blanchard

We discuss three related models of scale-free networks with the same degree distribution but different correlation properties. Starting from the Barabasi-Albert construction based on growth and preferential attachment we discuss two other…

Statistical Mechanics · Physics 2009-11-10 R. Xulvi-Brunet , W. Pietsch , I. M. Sokolov

The goal of these lectures is to review some mathematical aspects of random tree models used in evolutionary biology to model gene trees or species trees. We start with stochastic models of tree shapes (finite trees without edge lengths),…

Probability · Mathematics 2017-08-30 Amaury Lambert

The energy evolution of a quantum chaotic system under the perturbation that harmonically depends on time is studied for the case of large perturbation, in which the rate of transition calculated from the Fermi golden rule exceeds the…

Chaotic Dynamics · Physics 2009-11-11 P. V. Elyutin

We continue the study initiated by Jean Bertoin in 2012 of a random dynamics on the edges of a uniform Cayley tree with $n$ vertices in which, successively, each edge is either set on fire with some fixed probability $p_n$ or fireproof with…

Probability · Mathematics 2016-02-17 Cyril Marzouk

An analytical approach to calculating bond percolation thresholds, sizes of $k$-cores, and sizes of giant connected components on structured random networks with non-zero clustering is presented. The networks are generated using a…

Statistical Mechanics · Physics 2013-06-06 James P. Gleeson , Sergey Melnik