Related papers: Zero Temperature Properties of RNA Secondary Struc…
The zero neutrino mode of the double beta decay in heavy deformed nuclei is investigated in the framework of the pseudo SU(3) model, which has provided an accurate description of collective nuclear structure and predicted half-lives for the…
A mesoscopic model for heterogeneous DNA denaturation is developed in the framework of the path integral formalism. The base pair stretchings are treated as one-dimensional, time dependent paths contributing to the partition function. The…
Statistical DNA models available in the literature are often effective models where the base-pair state only (unbroken or broken) is considered. Because of a decrease by a factor of 30 of the effective bending rigidity of a sequence of…
DNA denaturation has long been a subject of intense study due to its relationship to DNA transcription and its fundamental importance as a nonlinear, structural transition. Many aspects of this phenomenon, however, remain poorly understood.…
We investigate the dynamics of a two dimensional axial next nearest neighbour Ising (ANNNI) model following a quench to zero temperature. The Hamiltonian is given by $H = -J_0\sum_{i,j=1}^L S_{i,j}S_{i+1,j} - J_1\sum_{i,j=1} [S_{i,j}…
We perform exact diagonalization studies in d=2 dimensions for the Fendley and Schoutens model of hard-core and nearest-neighbor excluding fermions that displays an exact non-relativistic supersymmetry. Using clusters of all possible shapes…
We calculate thermodynamic properties of a disordered model insulator, starting from the ideal simple-cubic lattice ($g = 0$) and increasing the disorder parameter $g$ to $\gg 1/2$. As in the earlier Einstein- and Debye- approximations, the…
Many new neutrinoless double beta decay (0nbb) experiments are planned or in preparation. If the 0nbb-decay will be detected, the key issue will be what is the dominant mechanism of this process. By measuring only transitions to the ground…
We present a thermodynamically robust coarse-grained model to simulate folding of RNA in monovalent salt solutions. The model includes stacking, hydrogen bond and electrostatic interactions as fundamental components in describing the…
The degeneracy of two-phase disordered microstructures consistent with a specified correlation function is analyzed by mapping it to a ground-state degeneracy. We determine for the first time the associated density of states via a Monte…
We study the energy minima of the fully-connected $m$-components vector spin glass model at zero temperature in an external magnetic field for $m\ge 3$. The model has a zero temperature transition from a paramagnetic phase at high field to…
A non-linear Penner type interaction is introduced and studied in the random matrix model of homo-RNA. The asymptotics in length of the partition function is discussed for small and large $N$ (size of matrix). The interaction doubles the…
We discuss the ground state of a two dimensional electron-lattice system described by a Su-Schrieffer-Heeger type Hamiltonian with a half-filled electronic band, for which it has been pointed out in the previous paper [J. Phys. Soc. Jpn. 69…
The order parameter P(q) for disordered systems with degenerate ground-states is reconsidered. We propose that entropy fluctuations lead to a trivial P(q) at zero temperature as in the non-degenerate case, even if there are zero-energy…
We present a new, nucleotide-level model for RNA, oxRNA, based on the coarse-graining methodology recently developed for the oxDNA model of DNA. The model is designed to reproduce structural, mechanical and thermodynamic properties of RNA,…
We study theoretically the mechanical failure of a simple model of double stranded DNA under an applied shear. Starting from a more microscopic Hamiltonian that describes a sheared DNA, we arrive at a nonlinear generalization of a ladder…
We report spin wave and DMRG studies of the ground and low-lying excited states of uniform and dimerized alternating spin chains. The DMRG procedure is also employed to obtain low-temperature thermodynamic properties of the system. The…
The RPA long range correlations are known to play a significant role in understanding the depletion of single particle-hole states observed in (e, e') and (e, e'p) measurements. Here the Random Phase Approximation (RPA) theory, implemented…
A core-softened model of a glass forming fluid is numerically studied in the limit of very low temperatures. The model shows two qualitatively different behaviors depending on the strength of the attraction between particles. For no or low…
We predict a novel temperature-driven phase transition of DNA below the melting transition. The additional, intermediate phase exists for repetitive sequences, when the two strands have different lengths. In this phase, the excess bases of…