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We study the evolution of a random weighted network with complex nonlinear dynamics at each node, whose activity may cease as a result of interactions with other nodes. Starting from a knowledge of the micro-level behaviour at each node, we…

Statistical Mechanics · Physics 2007-05-23 Sitabhra Sinha , Sudeshna Sinha

We introduce a new oriented evolving graph model inspired by biological networks. A node is added at each time step and is connected to the rest of the graph by random oriented edges emerging from older nodes. This leads to a statistical…

Disordered Systems and Neural Networks · Physics 2023-04-10 Michel Bauer , Denis Bernard

A growing family of random graphs is called robust if it retains a giant component after percolation with arbitrary positive retention probability. We study robustness for graphs, in which new vertices are given a spatial position on the…

Probability · Mathematics 2015-04-08 Emmanuel Jacob , Peter Morters

A single permutation, seen as union of disjoint cycles, represents a regular graph of degree two. Consider $d$ many independent random permutations and superimpose their graph structures. It is a common model of a random regular (multi-)…

Probability · Mathematics 2014-12-30 Shirshendu Ganguly , Soumik Pal

In complex systems, responses to small perturbations are too diverse to predict how much they would be definitely, and then such diverse responses can be predicted in a probabilistic way. Here we study such a problem in scale-free networks,…

Statistical Mechanics · Physics 2007-05-23 J. -H. Kim , K. -I. Goh , B. Kahng , D. Kim

Real networks often grow through the sequential addition of new nodes that connect to older ones in the graph. However, many real systems evolve through the branching of fundamental units, whether those be scientific fields, countries, or…

Physics and Society · Physics 2020-06-30 Muhua Zheng , Guillermo García-Pérez , Marián Boguñá , M. Ángeles Serrano

We study the diameter, or the mean distance between sites, in a scale-free network, having N sites and degree distribution p(k) ~ k^-a, i.e. the probability of having k links outgoing from a site. In contrast to the diameter of regular…

Disordered Systems and Neural Networks · Physics 2009-11-07 Reuven Cohen , Shlomo Havlin

Large real-world networks are typically scale-free. Recent research has shown that such graphs are described best in a geometric space. More precisely, the internet can be mapped to a hyperbolic space such that geometric greedy routing…

Discrete Mathematics · Computer Science 2015-12-03 Tobias Friedrich , Anton Krohmer

We show that not only preferential attachment but also preferential depletion leads to scale-free networks. The resulting degree distribution exponents is typically less than two (5/3) as opposed to the case of the growth models studied…

Physics and Society · Physics 2015-05-27 Christian M. Schneider , Lucilla de Arcangelis , Hans J. Herrmann

We discuss two sampling schemes for selecting random subnets from a network: Random sampling and connectivity dependent sampling, and investigate how the degree distribution of a node in the network is affected by the two types of sampling.…

Statistical Mechanics · Physics 2009-11-11 Michael P. H. Stumpf , Carsten Wiuf

We introduce a simple one-parameter network growth algorithm which is able to reproduce a wide variety of realistic network structures but without having to invoke any global information about node degrees such as preferential-attachment…

Statistical Mechanics · Physics 2007-05-23 David M. D. Smith , Chiu Fan Lee , Neil F. Johnson

We generalize the poissonian evolving random graph model of Bauer and Bernard to deal with arbitrary degree distributions. The motivation comes from biological networks, which are well-known to exhibit non poissonian degree distribution. A…

Statistical Mechanics · Physics 2009-11-07 Stephane Coulomb , Michel Bauer

We analyse growing networks ranging from collaboration graphs of scientists to the network of similarities defined among the various transcriptional profiles of living cells. For the explicit demonstration of the scale-free nature and…

Statistical Mechanics · Physics 2009-11-10 I. Farkas , I. Derenyi , H. Jeong , Z. Neda , Z. N. Oltvai , E. Ravasz , A. Schubert , A. -L. Barabasi , T. Vicsek

Scale free dynamics are observed in a variety of physical and biological systems. These include neural activity in which evidence for scale freeness has been reported using a range of imaging modalities. Here, we derive the ways in which…

We study a class of growth algorithms for directed graphs that are candidate models for the evolution of genetic regulatory networks. The algorithms involve partial duplication of nodes and their links, together with innovation of new…

Molecular Networks · Quantitative Biology 2007-05-23 D. V. Foster , S. A. Kauffman , J. E. S. Socolar

We propose a growing network model that consists of two tunable mechanisms: growth by merging modules which are represented as complete graphs and a fitness-driven preferential attachment. Our model exhibits the three prominent statistical…

Molecular Networks · Quantitative Biology 2007-07-31 Kazuhiro Takemoto , Chikoo Oosawa

We show that the connectivity distributions $P(k,t)$ of scale-free growing networks ($t$ is the network size) have the generic scale -- the cut-off at $k_{cut} \sim t^\beta$. The scaling exponent $\beta$ is related to the exponent $\gamma$…

Statistical Mechanics · Physics 2009-10-31 S. N. Dorogovtsev , J. F. F. Mendes , A. N. Samukhin

Network growth models that embody principles such as preferential attachment and local attachment rules have received much attention over the last decade. Among various approaches, random walks have been leveraged to capture such…

Probability · Mathematics 2017-11-09 Giulio Iacobelli , Daniel R. Figueiredo , Giovanni Neglia

Several studies on real complex networks from different fields as biology, economy, or sociology have shown that the degree of nodes (number of edges connected to each node) follows a scale-free power-law distribution like $P(k)\approx…

Biological Physics · Physics 2007-05-23 J. C. Nacher , T. Yamada , S. Goto , M. Kanehisa , T. Akutsu

Many methods have been developed for finding the commonalities between different organisms to study their phylogeny. The structure of metabolic networks also reveal valuable insights into metabolic capacity of species as well as into the…

Molecular Networks · Quantitative Biology 2016-04-08 Krishanu Deyasi , Anirban Banerjee , Bony Deb
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