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Via molecular dynamics simulation with Langevin thermostat we study the structure and dynamics of a flexible bead-spring active polymer model after a quench from good to poor solvent conditions. The self propulsion is introduced via a…

Soft Condensed Matter · Physics 2021-03-18 Subhajit Paul , Suman Majumder , Wolfhard Janke

The self-consistent field theory is a popular and highly successful theoretical framework for studying equilibrium (co)polymer systems at the mesoscopic level. Dynamic density functionals allow one to use this framework for studying…

Soft Condensed Matter · Physics 2021-02-15 Friederike Schmid , Bing Li

In this work we used dissipative particle dynamics simulations to study the copolymerization process in the presence of spatial heterogeneities caused by incompatibility between polymerizing monomers. The polymer sequence details as well as…

Soft Condensed Matter · Physics 2017-09-26 Alexey A. Gavrilov , Alexander V. Chertovich

We examine the condensed states of a simple semiflexible copolymer in which there are two monomer types that are immiscible with each other and with the solvent. Although this is similar to the well known problem of collapse for a…

Soft Condensed Matter · Physics 2007-05-23 E. Hernandez-Zapata , I. R. Cooke , D. R. M. Williams

A self-consistent field theory was developed in the grand-canonical ensemble formulation to study transitions in a helix-coil multiblock globule. Helical and coil parts are treated as stiff rods and self-avoiding walks of variable lengths…

Soft Condensed Matter · Physics 2007-05-23 Christian Nowak , Vakhtang G. Rostiashvili , Thomas A. Vilgis

A mesoscopic, mixed particle- and field-based Brownian dynamics methodology for the simulation of entangled polymer melts has been developed. Polymeric beads consist of several Kuhn segments, and their motion is dictated by the Helmholtz…

Soft Condensed Matter · Physics 2017-03-28 Georgios G. Vogiatzis , Grigorios Megariotis , Doros N. Theodorou

We study conformations assumed by single diblock star copolymers in a poor solvent by means of the Gaussian variational theory and Monte Carlo simulation in continuous space. Cases of stars with internal and external hydrophobic blocks are…

Soft Condensed Matter · Physics 2007-05-23 F. Ganazzoli , Yu. A. Kuznetsov , E. G. Timoshenko

Coexisting periodic solutions of a dynamical system describing nonlinear optical processes of the second-order are studied. The analytical results concern both the simplified autonomous model and the extended nonautonomous model, including…

Chaotic Dynamics · Physics 2007-05-23 I. Sliwa , P. Szlachetka , K. Grygiel

It is well known that path probabilities of Brownian motion correspond to the equilibrium configurational probabilities of flexible Gaussian polymers, while those of active Brownian motion correspond to in-extensible semiflexible polymers.…

Statistical Mechanics · Physics 2020-12-14 Amir Shee , Abhishek Dhar , Debasish Chaudhuri

We present the results of a self-consistent, unified molecular dynamics study of simple model heteropolymers in the continuum with emphasis on folding, sequence design and the determination of the interaction parameters of the effective…

Statistical Mechanics · Physics 2009-10-31 Cecilia Clementi , Amos Maritan , Jayanth R. Banavar

The polymer systems are discussed in the framework of the Landau-Ginzburg model. The model is derived from the mesoscopic Edwards hamiltonian via the conditional partition function. We discuss flexible, semiflexible and rigid polymers. The…

Condensed Matter · Physics 2007-05-23 Robert Holyst , T. A. Vilgis

The conformational and dynamical properties of active self-propelled filaments/polymers are investigated in the presence of hydrodynamic interactions by both, Brownian dynamics simulations and analytical theory. Numerically, a discrete…

Soft Condensed Matter · Physics 2020-08-04 Aitor Martin-Gomez , Thomas Eisenstecken , Gerhard Gompper , Roland G. Winkler

The associative interaction, such as hydrogen bonding, can bring about versatile functionalities to polymer systems, which has been investigated by tremendous researches, but the fundamental understanding on association process is still…

Soft Condensed Matter · Physics 2025-01-20 Xiangyu Zhang , Dong Meng

We report the experimental observation of a square crystalline phase in a vibrated binary mixture of spherical grains. This structure spontaneously forms from a disordered state, consistently with predictions obtained in an equilibrium…

Soft Condensed Matter · Physics 2025-12-09 A. Plati , R. Maire , F. Boulogne , F. Restagno , F. Smallenburg , G. Foffi

A simple model of a circularly closed dsDNA in a poor solvent is considered as an example of a semi-flexible polymer with self-attraction. To find the ground states, the conformational energy is computed as a sum of the bending and…

Biological Physics · Physics 2013-04-25 E. L. Starostin

This work presents a general and unified theory describing block copolymer self-assembly in the presence of free surfaces and nanoparticles in the context of Self-Consistent Filed Theory. Specifically, the derived theory applies to free and…

Soft Condensed Matter · Physics 2021-12-17 Daniil Bochkov , Ivana Bagaric , Gaddiel Ouaknin , Frederic Gibou

Self-propelled particles that are subject to noise are a well-established generic model system for active matter. A homogeneous alignment field can be used to orient the direction of the self-propulsion velocity and to model systems like…

Statistical Mechanics · Physics 2024-03-06 Sameh Othman , Jiarul Midya , Thorsten Auth , Gerhard Gompper

Over the past decade, autophoretic colloids have emerged as a prototypical system for studying self-propelled motion at microscopic scales, with promising applications in microfluidics, micromachinery, and therapeutics. Their motion in a…

Soft Condensed Matter · Physics 2026-05-19 Ursy Makanga , Akhil Varma , Panayiota Katsamba

Random heteropolymers do not display the typical equilibrium properties of globular proteins, but are the starting point to understand the physics of proteins and, in particular, to describe their non-native states. So far, they have been…

Biomolecules · Quantitative Biology 2015-06-03 Guido Tiana , Ludovico Sutto

We study the equilibrium dynamics of a single polymer chain under good solvent condition. Special emphasis is laid on varying the drag force experienced by the chain while it moves. To this end we model the solvent in a mesoscopic manner by…

Soft Condensed Matter · Physics 2019-05-01 Suman Majumder , Henrik Christiansen , Wolfhard Janke