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Obtaining reliable estimates of the statistical properties of complex macromolecules by computer simulation is a task that requires high computational effort as well as the development of highly efficient simulation algorithms. We present…

Soft Condensed Matter · Physics 2015-05-28 Hsiao-Ping Hsu , Wolfgang Paul

To establish the bond-site duality of explosive percolations in 2 dimension, the site and bond explosive percolation models are carefully defined on a square lattice. By studying the cluster distribution function and the behavior of the…

Statistical Mechanics · Physics 2012-06-01 Woosik Choi , Soon-Hyung Yook , Yup Kim

Rigidity Percolation is a crucial framework for describing rigidity transitions in amorphous systems. We present a new, efficient algorithm to study central-force Rigidity Percolation in two dimensions. This algorithm combines the Pebble…

Soft Condensed Matter · Physics 2026-02-12 Nina Javerzat , Daniele Notarmuzi

We consider a class of random, weighted networks, obtained through a redefinition of patterns in an Hopfield-like model and, by performing percolation processes, we get information about topology and resilience properties of the networks…

Statistical Mechanics · Physics 2015-05-30 Elena Agliari , Claudia Cioli , Enore Guadagnini

We study, on a square lattice, an extension to fully coordinated percolation which we call iterated fully coordinated percolation. In fully coordinated percolation, sites become occupied if all four of its nearest neighbors are also…

Statistical Mechanics · Physics 2007-05-23 E. Cuansing , H. Nakanishi

We consider a percolation process in which $k$ points separated by a distance proportional to system size $L$ simultaneously connect together ($k>1$), or a single point at the center of a system connects to the boundary ($k=1$), through…

Disordered Systems and Neural Networks · Physics 2020-07-08 S. S. Manna , Robert M. Ziff

We present an exact mathematical framework able to describe site-percolation transitions in real multiplex networks. Specifically, we consider the average percolation diagram valid over an infinite number of random configurations where…

Physics and Society · Physics 2016-12-21 Ginestra Bianconi , Filippo Radicchi

Site percolation in a distorted simple cubic lattice is characterized numerically employing the Newman-Ziff algorithm. Distortion is administered in the lattice by systematically and randomly dislocating its sites from their regular…

Statistical Mechanics · Physics 2022-09-12 Sayantan Mitra , Dipa Saha , Ankur Sensharma

We simulate the bond and site percolation models on a simple-cubic lattice with linear sizes up to L=512, and estimate the percolation thresholds to be $p_c ({\rm bond})=0.248\,811\,82(10)$ and $p_c ({\rm site})=0.311\,607\,7(2)$. By…

Statistical Mechanics · Physics 2015-06-12 Junfeng Wang , Zongzheng Zhou , Wei Zhang , Timothy M. Garoni , Youjin Deng

We investigate oriented bond-site percolation on the planar lattice in which entire columns are stretched. Generalising recent results by Hil\'ario et al., we establish non-trivial percolation under a $(1+\varepsilon)$-th moment condition…

Probability · Mathematics 2025-07-02 Benedikt Jahnel , Lukas Lüchtrath , Anh Duc Vu

We consider the percolation problem of sites on an $L\times L$ square lattice with periodic boundary conditions which were unvisited by a random walk of $N=uL^2$ steps, i.e. are vacant. Most of the results are obtained from numerical…

Statistical Mechanics · Physics 2021-03-24 Amit Federbush , Yacov Kantor

We present a detailed description of the idea and procedure for the newly proposed Monte Carlo algorithm of tuning the critical point automatically, which is called the probability-changing cluster (PCC) algorithm [Y. Tomita and Y. Okabe,…

Statistical Mechanics · Physics 2009-11-07 Yusuke Tomita , Yutaka Okabe

We investigate bond- and site-percolation models on several two-dimensional lattices numerically, by means of transfer-matrix calculations and Monte Carlo simulations. The lattices include the square, triangular, honeycomb kagome and diced…

Statistical Mechanics · Physics 2009-01-13 Xiaomei Feng , Youjin Deng , Henk W. J. Blote

The site and bond percolation problems are conventionally studied on (hyper)cubic lattices, which afford straightforward numerical treatments. The recent implementation of efficient simulation algorithms for high-dimensional systems now…

Statistical Mechanics · Physics 2021-06-14 Yi Hu , Patrick Charbonneau

In this paper we study statistical methods of parameters estimation of the site percolation model. Advantages of the proposed method is demonstrated for the computing of the confidence interval of mass fractal dimension of a percolation…

Statistical Mechanics · Physics 2011-09-20 P. V. Moskalev , K. V. Grebennikov , V. V. Shitov

We study the effect of positive correlations on the critical threshold of site and bond percolation in a square lattice with d = 2. We propose two algorithms for generating dependent lattices with minimal correlation length and non-negative…

Statistical Mechanics · Physics 2014-02-13 Navid Dianati , YenTing Lin

In the context of Monte Carlo sampling for lattice models, the complexity of the energy landscape often leads to Markov chains being trapped in local optima, thereby increasing the correlation between samples and reducing sampling…

Statistical Mechanics · Physics 2024-10-29 Jiewei Ding , Jiahao Su , Ho-Kin Tang , Wing Chi Yu

We simulate the bond and site percolation models on several three-dimensional lattices, including the diamond, body-centered cubic, and face-centered cubic lattices. As on the simple-cubic lattice [Phys. Rev. E, \textbf{87} 052107 (2013)],…

Statistical Mechanics · Physics 2014-01-24 Xiao Xu , Junfeng Wang , Jian-Ping Lv , Youjin Deng

We study site- and bond-percolation on a class of lattices referred to as Lieb lattices. In two dimensions the Lieb lattice (LL) is also known as the decorated square lattice, or as the CuO$_2$ lattice; in three dimensions it can be…

Statistical Mechanics · Physics 2022-01-05 W. S. Oliveira , J. Pimentel de Lima , Natanael C. Costa , R. R. dos Santos

Using a recently introduced algorithm for simulating percolation in microcanonical (fixed-occupancy) samples, we study the convergence with increasing system size of a number of estimates for the percolation threshold for an open system…

Statistical Mechanics · Physics 2009-11-07 R. M. Ziff , M. E. J. Newman