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It has recently been reported that bacteria, such as E.coli and P. putida, perform distinct modes of motion when placed in porous media as compared to dilute regions or free space. This has led us to suggest an efficient strategy for active…

Soft Condensed Matter · Physics 2022-04-12 Ehsan Irani , Zahra Mokhtari , Annette Zippelius

We study stability issue of reset and impulsive switched systems. We find time constraints (dwell time and flee time) on switching signals which stabilize a given reset switched system. For a given collection of matrices, we find an…

Dynamical Systems · Mathematics 2023-06-21 Swapnil Tripathi , Nikita Agarwal

For three-dimensional piecewise-smooth systems of ordinary differential equations, this paper characterises the stability of points that belong to a switching surface and are equilibria of exactly one of the two neighbouring pieces of the…

Dynamical Systems · Mathematics 2026-02-10 David J. W. Simpson

Experimental studies of microbial communities routinely reveal that they have multiple stable states. While each of these states is generally resilient, certain perturbations such as antibiotics, probiotics and diet shifts, result in…

Populations and Evolution · Quantitative Biology 2019-02-15 Akshit Goyal , Veronika Dubinkina , Sergei Maslov

A stochastic reaction-diffusion model is studied on a networked support. In each patch of the network two species are assumed to interact following a non-normal reaction scheme. When the interaction unit is replicated on a directed linear…

The stability problem of a class of nonlinear switched systems defined on compact sets with state-dependent switching is considered. Instead of the Caratheodory solutions, the general Filippov solutions are studied. This encapsulates…

Optimization and Control · Mathematics 2017-07-31 Mohamadreza Ahmadi , Hamed Mojallali , Rafael Wisniewski

Bacteriophages are central to microbial ecosystems for balancing bacterial populations and promoting evolution by applying strong selection pressure. Here we review some of the known aspects that modulate phage-bacteria interaction in a way…

Populations and Evolution · Quantitative Biology 2023-04-12 Namiko Mitarai , Anastasios Marantos , Kim Sneppen

Extensive simulations are performed to study the persistence behavior of a conserved lattice gas model exhibiting an absorbing phase transition from an active phase into an inactive phase. Both the global and the local persistence exponents…

Statistical Mechanics · Physics 2009-11-07 S. Lubeck , A. Misra

We study discrete time linear constrained switching systems with additive disturbances, in which the switching may be on the system matrices, the disturbance sets, the state constraint sets or a combination of the above. In our general…

Systems and Control · Computer Science 2017-02-03 Nikolaos Athanasopoulos , Konstantinos Smpoukis , Raphael M. Jungers

Designing a static state-feedback controller subject to structural constraint achieving asymptotic stability is a relevant problem with many applications, including network decentralized control, coordinated control, and sparse feedback…

Optimization and Control · Mathematics 2021-06-03 Francesco Ferrante , Fabrizio Dabbene , Chiara Ravazzi

There is an abundance of evidence that some relaxation dynamics, e.g., exponential decays, are much more common in nature than others. Recently, there have been attempts to trace this dominance back to a certain stability of the prevalent…

Quantum Physics · Physics 2022-08-26 Robin Heveling , Jiaozi Wang , Christian Bartsch , Jochen Gemmer

One strategy for winning a coevolutionary struggle is to evolve rapidly. Most of the literature on host-pathogen coevolution focuses on this phenomenon, and looks for consequent evidence of coevolutionary arms races. An alternative…

Populations and Evolution · Quantitative Biology 2012-11-14 Erick Chastain , Rustom Antia , Carl T. Bergstrom

Localized wave fronts are a fundamental feature of biological systems from cell biology to ecology. Here, we study a broad class of bistable models subject to self-activation, degradation and spatially inhomogeneous activating agents. We…

Cell Behavior · Quantitative Biology 2014-05-27 Steffen Rulands , Ben Klünder , Erwin Frey

We present a minimal model to study liquid phase separation in a fixed pH ensemble. The model describes a mixture composed of macromolecules that exist in three different charge states and have a tendency to phase separate. We introduce the…

Biological Physics · Physics 2020-10-30 Omar Adame-Arana , Christoph A. Weber , Vasily Zaburdaev , Jacques Prost , Frank Jülicher

Metastable phases present a promising route to expand the functionality of complex materials. Of particular interest are light-induced metastable phases that are inaccessible under equilibrium conditions, as they often host new, emergent…

Instabilities are common phenomena frequently observed in nature, sometimes leading to unexpected catastrophes and disasters in seemingly normal conditions. The simplest form of instability in a distributed system is its response to a…

Pattern Formation and Solitons · Physics 2016-02-05 O. Kimmoun , H. C. Hsu , H. Branger , M. S. Li , Y. Y. Chen , C. Kharif , M. Onorato , E. J. R. Kelleher , B. Kibler , N. Akhmediev , A. Chabchoub

Fluctuating environments pose tremendous challenges to bacterial populations. It is observed in numerous bacterial species that individual cells can stochastically switch among multiple phenotypes for the population to survive in rapidly…

Molecular Networks · Quantitative Biology 2015-01-20 Chen Jia , Min-Ping Qian , Yu Kang , Da-Quan Jiang

The significant role of epigenetic mechanisms within natural systems has become increasingly clear. This paper uses a recently presented abstract, tunable Boolean genetic regulatory network model to explore aspects of epigenetics. It is…

Neural and Evolutionary Computing · Computer Science 2013-06-21 Larry Bull

Equilibrating gravitation by electric forces, microparticles can be confined in the plasma sheath above suitably biased local electrodes.Their position depends on the detailed structure of the plasma sheath and on the charge that the…

Plasma Physics · Physics 2010-10-15 G. Schubert , R. Basner , H. Kersten , H. Fehske

The motility of eukaryotic cells is strongly influenced by their environment, with confined cells often developing qualitatively different motility patterns from those migrating on simple two-dimensional substrates. Recent experiments,…

Cell Behavior · Quantitative Biology 2024-12-24 Pedrom Zadeh , Brian A. Camley