English
Related papers

Related papers: Scaling in a continuous time model for biological …

200 papers

We study analytically the aging dynamics of the O(n) model in the large-n limit, with conserved and with non-conserved order parameter. While in the non-conserved dynamics, the autocorrelation function scales in the usual way C(t,tw) =…

Statistical Mechanics · Physics 2009-10-31 Ludovic Berthier

We investigate the scaling limit of the seed bank diffusion when reproduction and migration (to and from the seed bank) happen on different time-scales. More precisely, we consider the case when migration is `slow' and reproduction is…

Background: Hybridogenesis is a very interesting example of reproduction which seems to integrate the sexual and clonal processes in one system. In a case of frogs, described in the paper, two parental species - Rana lessonae and Rana…

Genomics · Quantitative Biology 2009-03-18 Mateusz Kula , Katarzyna Bonkowska , Maria Ogielska , Piotr Kierzkowski , Anna Zalesna , Stanislaw Cebrat

A superprocess limit for an interacting birth-death particle system modelling a population with trait and physical age-structures is established. Traits of newborn offspring are inherited from the parents except when mutations occur, while…

Probability · Mathematics 2011-11-29 Sylvie Méléard , Viet Chi Tran

Mechanisms leading to speciation are a major focus in evolutionary biology. In this paper, we present and study a stochastic model of population where individuals, with type a or A, are equivalent from ecological, demographical and spatial…

Populations and Evolution · Quantitative Biology 2017-04-20 Camille Coron , Manon Costa , Hélène Leman , Charline Smadi

Two powerful and complementary experimental approaches are commonly used to study the cell cycle and cell biology: One class of experiments characterizes the statistics (or demographics) of an unsynchronized exponentially-growing…

Biological Physics · Physics 2022-02-02 Dean Huang , Teresa Lo , Houra Merrikh , Paul A. Wiggins

This work is devoted to the study of the scaling, and the consequent power-law behavior, of the correlation function in a mutation-replication model known as the expansion-modification system. The latter is a biology inspired random…

Probability · Mathematics 2015-06-04 Raúl Salgado-García , Edgardo Ugalde

The mean size of exponentially dividing E. coli cells cultured in different nutrient conditions is known to depend on the mean growth rate only. However, the joint fluctuations relating cell size, doubling time and individual growth rate…

Application of some basic notions and statistics of ageing distributions used in mathematical theory of reliability including the Gini-type index is discussed as a methodological tool for investigation of human population ageing and…

Applications · Statistics 2014-08-13 Mark. P. Kaminskiy

We consider the evolution of populations under the joint action of mutation and differential reproduction, or selection. The population is modelled as a finite-type Markov branching process in continuous time, and the associated…

Populations and Evolution · Quantitative Biology 2009-02-23 Ellen Baake , Hans-Otto Georgii

Self-organisation of individuals within large collectives occurs throughout biology. Mathematical models can help elucidate the individual-level mechanisms behind these dynamics, but analytical tractability often comes at the cost of…

Building on an analogy with conformal invariance, local scale transformations consistent with dynamical scaling are constructed. Two types of local scale invariance are found which act as dynamical space-time symmetries of certain non-local…

Statistical Mechanics · Physics 2007-05-23 Malte Henkel

We studied phase separation in a particle interacting system under a large drive along x. We here identify the basic growth mechanisms, and demonstrate time self-similarity, finite-size scaling, as well as other interesting features of both…

Statistical Mechanics · Physics 2009-11-07 Pablo I. Hurtado , J. Marro , E. V. Albano

The Gompertz model since 1825 has significantly contributed to interpretation of ageing in biological and social sciences. However, in modern research findings, it is clear that the Gompertz model is not successful to describe the whole…

Populations and Evolution · Quantitative Biology 2007-05-23 Byung Mook Weon

We consider an asexual biological population of constant size $N$ evolving in discrete time under the influence of selection and mutation. Beneficial mutations appear at rate $U$ and their selective effects $s$ are drawn from a distribution…

Populations and Evolution · Quantitative Biology 2015-05-14 Su-Chan Park , Damien Simon , Joachim Krug

In this paper, we review recent results of ours concerning branching processes with general lifetimes and neutral mutations, under the infinitely many alleles model, where mutations can occur either at birth of individuals or at a constant…

Probability · Mathematics 2012-11-29 Nicolas Champagnat , Amaury Lambert , Mathieu Richard

We introduce the following model for the evolution of a population. At every discrete time $j\geq 0$ exactly one individual is introduced in the population and is assigned a death probability $c_j$ sampled from $C$, a fixed probability…

Probability · Mathematics 2023-07-20 Luiz Renato Fontes , Fabio P. Machado , Rinaldo B. Schinazi

We study a continuous-time dynamical system that models the evolving distribution of genotypes in an infinite population where genomes may have infinitely many or even a continuum of loci, mutations accumulate along lineages without…

Populations and Evolution · Quantitative Biology 2009-02-03 Aubrey Clayton , Steven N. Evans

We study ageing during surface growth processes described by the one-dimensional Kardar-Parisi-Zhang equation. Starting from a flat initial state, the systems undergo simple ageing in both correlators and linear responses and its dynamical…

Statistical Mechanics · Physics 2012-03-29 Malte Henkel , Jae Dong Noh , Michel Pleimling

Human life expectancy has dramatically improved over the course of the last century. Although this reflects a global improvement in sanitation and medical care, this also implies that more people suffer from diseases that typically manifest…

Other Quantitative Biology · Quantitative Biology 2022-07-11 Alexis Rapin , Maroun Bou Sleiman , Johan Auwerx