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We consider an age-size structured cell population model based on the cell cycle length. The model is described by a first order partial differential equation with initial-boundary conditions. Using the theory of semigroups of positive…

Analysis of PDEs · Mathematics 2022-06-15 Katarzyna Pichór , Ryszard Rudnicki

We introduce into the Penna Model for biological ageing one of the possible male mechanisms used to maximize the ability of their sperm to compete with sperm from other males. Such a selfish mechanism increases the male reproduction success…

Condensed Matter · Physics 2009-11-07 P. M. C de Oliveira , S. Moss de Oliveira

Cellular senescence is thought to play a major role in age-related diseases, which cause nearly 67% of all human deaths worldwide. Recent research in mice showed that exercising mice had higher levels of telomerase, an enzyme that helps…

Populations and Evolution · Quantitative Biology 2013-11-13 Avikar Periwal

We employ the framework of multitype Galton-Watson processes to model a population of dividing cells. The cellular type is represented by its biological age, defined as the count of harmful proteins hosted by the cell. The stochastic…

Probability · Mathematics 2024-06-03 Serik Sagitov , Lotta Eriksson , Marija Cvijovic

The cell cycle duration is a variable cellular phenotype that underlies long-term population growth and age structures. By analyzing the stationary solutions of a branching process with heritable cell division times, we demonstrate…

Populations and Evolution · Quantitative Biology 2021-01-04 Takashi Nozoe , Edo Kussell

We show aging of Glauber-type dynamics on the random energy model, in the sense that we obtain the scaling limits of the clock process and of the age process. The latter encodes the Gibbs weight of the configuration occupied by the…

Probability · Mathematics 2013-03-21 Pierre Mathieu , Jean-Christophe Mourrat

The spread of a particular trait in a cell population often is modelled by an appropriate system of ordinary differential equations describing how the sizes of subpopulations of the cells with the same genome change in time. On the other…

Dynamical Systems · Mathematics 2016-05-26 J. Banasiak , A. Falkiewicz

We introduce a broad class of spatial models to describe how spatially heterogeneous populations live, die, and reproduce. Individuals are represented by points of a point measure, whose birth and death rates can depend both on spatial…

Probability · Mathematics 2024-01-02 Alison M. Etheridge , Thomas G. Kurtz , Ian Letter , Peter L. Ralph , Terence Tsui Ho Lung

We build upon our previous analytical results for the Penna model of senescence to include positive mutations. We investigate whether a small but non-zero positive mutation rate gives qualitatively different results to the traditional Penna…

Populations and Evolution · Quantitative Biology 2007-05-23 J. B. Coe , Y. Mao , M. E. Cates

We removed from the Penna model for biological ageing any random killing Verhulst factor. Deaths are due only to genetic diseases and the population size is fixed, instead of fluctuating around some constant value. We show that these…

Statistical Mechanics · Physics 2007-05-23 S. Moss de Oliveira , P. M. C de Oliveira , J. S. Sa Martins

We present a mathematical simplification for the evolutionary dynamics of a heritable trait within a two-sex population. This trait is assumed to control the timing of sex-specific life-history events, such as the age of sexual maturity and…

Populations and Evolution · Quantitative Biology 2019-07-04 M. H. Chan , K. Hawkes , P. S. Kim

Using an artificial system of self-replicating strings, we show a correlation between the age of a genotype and its abundance that reflects a punctuated rather than gradual picture of evolution, as suggested long ago by Willis. In support…

adap-org · Physics 2008-02-03 C. Adami , C. T. Brown , M. Haggerty

We combine the Penna Model for biological aging, which is based on the mutation-accumulation theory, with a sort of antagonistic pleiotropy. We show that depending on how the pleiotropy is introduced, it is possible to reproduce both the…

Statistical Mechanics · Physics 2009-11-07 A. O. Sousa , S. Moss de Oliveira

We introduce an age-structured asexual population model containing all the relevant features of evolutionary ageing theories. Beneficial as well as deleterious mutations, heredity and arbitrary fecundity are present and managed by natural…

Statistical Mechanics · Physics 2009-10-31 R. N. Onody , N. G. F. de Medeiros

We study a class of evolution models, where the breeding process involves an arbitrary exchangeable process, allowing for mutations to appear. The population size $n$ is fixed, hence after breeding, selection is applied. Individuals are…

Probability · Mathematics 2022-05-03 Daniela Bertacchi , Juri Lember , Fabio Zucca

We build upon the recent steady-state Penna model solution, Phys.Rev.Lett. 89, 288103 (2002), to study the population dynamics within the Penna model. We show, that any perturbation to the population can be broken into a collection of modes…

Populations and Evolution · Quantitative Biology 2007-05-23 J. B. Coe , Y. Mao

The paper discusses a connection between asymmetric reproduction -- that is reproduction in a parent-child relationship where the parent does not mutate during reproduction --, the fact that all non-viral lifeforms bear genes of their…

Populations and Evolution · Quantitative Biology 2015-08-11 Norbert Michael Mayer

Cellular transformations which involve a significant phenotypical change of the cell's state use bistable biochemical switches as underlying decision systems. In this work, we aim at linking cellular decisions taking place on a time scale…

Cell Behavior · Quantitative Biology 2010-05-11 Steffen Waldherr , Jingbo Wu , Frank Allgöwer

Biological time can be measured in two ways: in generations and in physical (chronological) time. When generations overlap, these two notions diverge, which impedes our ability to relate mathematical models to real populations. In this…

Populations and Evolution · Quantitative Biology 2026-04-08 Kaan Öcal , Michael P. H. Stumpf

What is aging? Mechanistic answers to this question remain elusive despite decades of research. Here, we propose a mathematical model of cellular aging based on a model gene interaction network. Our network model is made of only non-aging…

Molecular Networks · Quantitative Biology 2023-09-12 Hong Qin