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In this chapter, an application of Mathematical Epidemiology to crop vector-borne diseases is presented to investigate the interactions between crops, vectors, and virus. The main illustrative example is the cassava mosaic disease (CMD).…

Populations and Evolution · Quantitative Biology 2019-12-12 Michael Chapwanya , Yves Dumont

An introduction to cellular automata (both deterministic and probabilistic) with examples. Definition of deterministic automata, dynamical properties, damage spreading and Lyapunov exponents; probabilistic automata and Markov processes,…

Statistical Mechanics · Physics 2007-05-23 Franco Bagnoli

A cellular automaton model is presented for random walkers with biologically motivated interactions favoring local alignment and leading to collective motion or swarming behavior. The degree of alignment is controlled by a sensitivity…

Biological Physics · Physics 2009-10-30 H. J. Bussemaker , A. Deutsch , E. Geigant

We construct a two dimensional Cellular Automata based model for the description of pedestrian dynamics. Wide range of complicated pattern formation phenomena in pedestrian dynamics are described in the model, e.g. lane formation, jams in a…

Cellular Automata and Lattice Gases · Physics 2012-11-29 Quntao Zhuang

The essential ingredient for studying the phenomena of emergence is the ability to generate and manipulate emergent systems that span large scales. Cellular automata are the model class particularly known for their effective scalability but…

Neural and Evolutionary Computing · Computer Science 2023-06-13 Sina Khajehabdollahi , Emmanouil Giannakakis , Victor Buendia , Georg Martius , Anna Levina

We explore some aspects of phase transitions in cellular automata. We start recalling the standard formulation of statistical mechanics of discrete systems (Ising model), illustrating the Monte Carlo approach as Markov chains and stochastic…

Statistical Mechanics · Physics 2023-12-05 Franco Bagnoli , Raul Rechtman

Viral kinetics have been extensively studied in the past through the use of spatially homogeneous ordinary differential equations describing the time evolution of the diseased state. However, spatial characteristics such as localized…

Cell Behavior · Quantitative Biology 2007-05-23 Catherine Beauchemin , John Samuel , Jack Tuszynski

A multispecies artificial ecosystem is formulated using cellular automata with species interactions and food chain hierarchy. The constructed finite state automaton can simulate the complexity and self-organized characteristics of the…

Cellular Automata and Lattice Gases · Physics 2010-03-30 Xin-She Yang

Cyclic cellular automata (CCA) are models of excitable media. Started from random initial conditions, they produce several different kinds of spatial structure, depending on their control parameters. We introduce new tools from information…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Cosma Rohilla Shalizi , Kristina Lisa Shalizi

We consider the SEIRS epidemiology model with such features of the COVID-19 outbreak as: abundance of unidentified infected individuals, limited time of immunity and a possibility of vaccination. The control of the pandemic dynamics is…

Populations and Evolution · Quantitative Biology 2026-03-31 J. Ilnytskyi , T. Patsahan

Wildland fire dynamics is a complex turbulent dimensional process. Cellular automata (CA) is an efficient tool to predict fire dynamics, but the main parameters of the method are challenging to estimate. To overcome this challenge, we…

Cellular Automata and Lattice Gases · Physics 2017-12-14 Miles Currie , Kevin Speer , Kevin Hiers , Joseph O'Brien , Scott Goodrick , Bryan Quaife

Between the years 2020 to 2022, the world was hit by the pandemic of COVID-19 giving rise to an extremely grave situation. The global economy was badly hurt due to the consequences of various intervention strategies (like social distancing,…

Physics and Society · Physics 2023-07-28 Sourav Chowdhury , Suparna Roychowdhury , Indranath Chaudhuri

Cellular automata (CA) are discrete-time dynamical systems with local update rules on a lattice. Despite their elementary definition, CA support a wide spectrum of macroscopic phenomena central to statistical physics: equilibrium and…

Statistical Mechanics · Physics 2026-03-31 Mihir Metkar , Neha Sah , Yichen Zhou

We formulate a generalized susceptible exposed infectious recovered (SEIR) model on a graph, describing the population dynamics of an open crowded place with an arbitrary topology. As a sample calculation, we discuss three simple cases,…

Physics and Society · Physics 2020-12-18 Andrea Nava , Alessandro Papa , Marco Rossi , Domenico Giuliano

Based on recent experiments with time-lapse fluorescent imaging, we propose a cellular automaton model for the dynamics of vascular endothelial cells (ECs) in angiogenic morphogenesis. The model successfully reproduces cell mixing behavior,…

Cellular Automata and Lattice Gases · Physics 2015-07-22 Keisuke Matsuya , Hiroki Kurihara , Tetsuji Tokihiro

The advantage of Cellular Potts Model (CPM) is due to its ability for introducing cell-cell interaction based on the well known statistical model i.e. the Potts model. On the other hand, Lattice gas Cellular Automata (LGCA) can simulate…

Cellular Automata and Lattice Gases · Physics 2007-05-23 Mehrdad Ghaemi , Amene Shahrokhi

This article introduces new tools to study self-organisation in a family of simple cellular automata which contain some particle-like objects with good collision properties (coalescence) in their time evolution. We draw an initial…

Dynamical Systems · Mathematics 2018-06-05 Benjamin Hellouin de Menibus , Mathieu Sablik

Cellular automata are a set of computational models in discrete space that have a discrete time evolution defined by neighbourhood rules. They are used to simulate many complex systems in physics and science in general. In this work,…

Cellular Automata and Lattice Gases · Physics 2023-05-12 Luca Bertolani , Andrea Idini

We consider a probabilistic cellular automaton to analyze the stochastic dynamics of a predator-prey system. The local rules are Markovian and are based in the Lotka-Volterra model. The individuals of each species reside on the sites of a…

Populations and Evolution · Quantitative Biology 2016-08-14 Kelly C. de Carvalho , Tânia Tomé

COVID-19 pandemic is severely impacting the lives of billions across the globe. Even after taking massive protective measures like nation-wide lockdowns, discontinuation of international flight services, rigorous testing etc., the infection…

Quantitative Methods · Quantitative Biology 2020-08-28 Sayantari Ghosh , Saumik Bhattacharya