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We describe the first parallel implementation of an adaptive particle-particle, particle-mesh code with smoothed particle hydrodynamics. Parallelisation of the serial code, ``Hydra'', is achieved by using CRAFT, a Cray proprietary language…

Astrophysics · Physics 2009-10-30 F. R. Pearce , H. M. P. Couchman

Using (a,b)-trees as an example, we show how to perform a parallel split with logarithmic latency and parallel join, bulk updates, intersection, union (or merge), and (symmetric) set difference with logarithmic latency and with information…

Data Structures and Algorithms · Computer Science 2016-05-12 Yaroslav Akhremtsev , Peter Sanders

We present a GPU solution for exact maximal clique enumeration (MCE) that performs a search tree traversal following the Bron-Kerbosch algorithm. Prior works on parallelizing MCE on GPUs perform a breadth-first traversal of the tree, which…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-04-25 Mohammad Almasri , Yen-Hsiang Chang , Izzat El Hajj , Rakesh Nagi , Jinjun Xiong , Wen-mei Hwu

Important computational physics problems are often large-scale in nature, and it is highly desirable to have robust and high performing computational frameworks that can quickly address these problems. However, it is no trivial task to…

Mathematical Software · Computer Science 2017-09-18 J. Chang , K. B. Nakshatrala , M. G. Knepley , L. Johnsson

The kd-tree is a fundamental tool in computer science. Among other applications, the application of kd-tree search (by the tree method) to the fast evaluation of particle interactions and neighbor search is highly important, since the…

Instrumentation and Methods for Astrophysics · Physics 2011-12-21 Naohito Nakasato

We have implemented a parallel version of the Barnes-Hut 3-D N-body tree algorithm under PVM 3.2.5, adopting an SPMD paradigm. We parallelize the problem by decomposing the physical domain by means of the {\bf Orthogonal Recursive…

Astrophysics · Physics 2007-05-23 V. Antonuccio-Delogu , U. Becciani

The British Geological Survey's global geomagnetic model, Model of the Earth's Magnetic Environment (MEME), is an important tool for calculating the earth's magnetic field, which is continually in flux. Whilst the ability to collect data…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-10-02 Nick Brown , Brian Bainbridge , Ciarán Beggan , Susan Macmillan , William Brown , Brian Hamilton

The paper presents the first \emph{concurrency-optimal} implementation of a binary search tree (BST). The implementation, based on a standard sequential implementation of an internal tree, ensures that every \emph{schedule} is accepted,…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-03-03 Vitaly Aksenov , Vincent Gramoli , Petr Kuznetsov , Anna Malova , Srivatsan Ravi

An adaptation of the Particle-Particle/Particle-Mesh (P3M) code to the special purpose hardware GRAPE is presented. The short range force is calculated by a four chip GRAPE-3A board, while the rest of the calculation is performed on a Sun…

Astrophysics · Physics 2009-10-22 Philippe P. Brieu , FJ Summers , Jeremiah P. Ostriker

The energy-efficient Adapteva Epiphany architecture exhibits massive many-core scalability in a physically compact 2D array of RISC cores with a fast network-on-chip (NoC). With fully divergent cores capable of MIMD execution, the physical…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-04-15 James A. Ross , David A. Richie

We examine the problem of optimizing classification tree evaluation for on-line and real-time applications by using GPUs. Looking at trees with continuous attributes often used in image segmentation, we first put the existing algorithms for…

Distributed, Parallel, and Cluster Computing · Computer Science 2011-11-08 Jason Spencer

The last ten years have witnessed fast spreading of massively parallel computing clusters, from leading supercomputing facilities down to the average university computing center. Many companies in the private sector have undergone a similar…

Computational Engineering, Finance, and Science · Computer Science 2021-07-28 Xiao Zhang , Sebastian Achilles , Jan Winkelmann , Roland Haas , André Schleife , Edoardo Di Napoli

Monte Carlo Tree Search (MCTS) methods have achieved great success in many Artificial Intelligence (AI) benchmarks. The in-tree operations become a critical performance bottleneck in realizing parallel MCTS on CPUs. In this work, we develop…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-08-25 Yuan Meng , Rajgopal Kannan , Viktor Prasanna

We describe a parallel, cosmological N-body code based on a hybrid scheme using the particle-mesh (PM) and Barnes-Hut (BH) oct-tree algorithm. We call the algorithm GOTPM for Grid-of-Oct-Trees-Particle-Mesh. The code is parallelized using…

Astrophysics · Physics 2015-06-24 John Dubinski , Juhan Kim , Changbom Park , Robin Humble

Tree projections provide a unifying framework to deal with most structural decomposition methods of constraint satisfaction problems (CSPs). Within this framework, a CSP instance is decomposed into a number of sub-problems, called views,…

Artificial Intelligence · Computer Science 2017-11-15 Georg Gottlob , Gianlugi Greco , Francesco Scarcello

N-body algorithms for long-range unscreened interactions like gravity belong to a class of highly irregular problems whose optimal solution is a challenging task for present-day massively parallel computers. In this paper we describe a…

Computational Physics · Physics 2009-10-30 U. Becciani , R. Ansaloni , V. Antonuccio-Delogu , G. Erbacci , M. Gambera , A. Pagliaro , -

SHAP (SHapley Additive exPlanation) values provide a game theoretic interpretation of the predictions of machine learning models based on Shapley values. While exact calculation of SHAP values is computationally intractable in general, a…

Machine Learning · Computer Science 2022-02-04 Rory Mitchell , Eibe Frank , Geoffrey Holmes

We describe the two-dimensional TreePM method in this paper. The 2d TreePM code is an accurate and efficient technique to carry out large two-dimensional N-body simulations in cosmology. This hybrid code combines the 2d Barnes and Hut Tree…

Astrophysics · Physics 2009-11-10 Suryadeep Ray

Although poor for small dynamic scales, the Particle-Mesh (PM) model allows in astrophysics good insight for large dynamic scales at low computational cost. Furthermore, it is possible to employ a very high number of particles to get high…

Astrophysics · Physics 2007-05-23 E. Carretti , A. Messina

The rapid evolution of programming languages and software systems has necessitated the implementation of multilingual and scalable clone detection tools. However, it is difficult to achieve the above requirements at the same time. Most…

Software Engineering · Computer Science 2024-12-06 Yuhang Ye , Yuekun Wang , Yinxing Xue , Yueming Wu , Yang Liu