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In this letter we describe the pseudoparticle multipole method (P2M2), a new method to express multipole expansion by a distribution of pseudoparticles. We can use this distribution of particles to calculate high order terms in both the…

Astrophysics · Physics 2009-10-31 Atsushi Kawai , Junichiro Makino

We have incorporated star formation algorithms into a hybrid N-body/smoothed particle hydrodynamics code (TREESPH) in order to describe the star forming properties of disk galaxies over timescales of a few billion years. The models employ a…

Astrophysics · Physics 2007-05-23 Chris Mihos , Lars Hernquist

Context. The magnetic field in the solar atmosphere continually reconnects and accelerates charged particles to high energies. Simulations of the atmosphere in three dimensions that include the effects of accelerated particles can aid our…

Solar and Stellar Astrophysics · Physics 2022-10-05 L. Frogner , B. V. Gudiksen

This work presents the Parallelized Hierarchical Connectome (PHC), a general architectural framework that upgrades temporal-only State-Space Models (SSMs) into spatiotemporal recurrent networks. Conventional SSMs achieve parallel-scan…

Neurons and Cognition · Quantitative Biology 2026-05-21 Po-Han Chiang

Contour trees offer an abstract representation of the level set topology in scalar fields and are widely used in topological data analysis and visualization. However, applying contour trees to large-scale scientific datasets remains…

Computational Geometry · Computer Science 2025-08-13 Mingzhe Li , Hamish Carr , Oliver Rübel , Bei Wang , Gunther H. Weber

This paper presents new parallel algorithms for generating Euclidean minimum spanning trees and spatial clustering hierarchies (known as HDBSCAN$^*$). Our approach is based on generating a well-separated pair decomposition followed by using…

Data Structures and Algorithms · Computer Science 2021-04-05 Yiqiu Wang , Shangdi Yu , Yan Gu , Julian Shun

Designing large-scale geological carbon capture and storage projects and ensuring safe long-term CO2 containment - as a climate change mitigation strategy - requires fast and accurate numerical simulations. These simulations involve solving…

Mathematical Software · Computer Science 2023-04-25 Ryuichi Sai , Mathias Jacquelin , François P. Hamon , Mauricio Araya-Polo , Randolph R. Settgast

Although poor for small dynamic scales, the Particle-Mesh (PM) model allows in astrophysics good insight for large dynamic scales at low computational cost. Furthermore, it is possible to employ a very high number of particles to get high…

Astrophysics · Physics 2007-05-23 E. Carretti , A. Messina

We discuss the design and implementation of HYDRA_OMP a parallel implementation of the Smoothed Particle Hydrodynamics-Adaptive P3M (SPH-AP3M) code HYDRA. The code is designed primarily for conducting cosmological hydrodynamic simulations…

Astrophysics · Physics 2009-11-11 R. J. Thacker , H. M. P. Couchman

We analyse the performance of twelve different implementations of Smoothed Particle Hydrodynamics (SPH) using seven tests designed to isolate key hydrodynamic elements of cosmological simulations which are known to cause the SPH algorithm…

Astrophysics · Physics 2009-10-30 R. J. Thacker , E. R. Tittley , F. R. Pearce , H. M. P. Couchman , P. A. Thomas

A novel approach to parallelize the well-known Hoshen-Kopelman algorithm has been chosen, suitable for simulating huge lattices in high dimensions on massively-parallel computers with distributed memory and message passing. This method…

Statistical Mechanics · Physics 2009-11-07 Daniel Tiggemann

Finding the exact close neighbors of each fluid element in mesh-free computational hydrodynamical methods, such as the Smoothed Particle Hydrodynamics (SPH), often becomes a main bottleneck for scaling their performance beyond a few million…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-05-19 Aurélien Cavelan , Rubén M. Cabezón , Jonas H. M. Korndorfer , Florina M. Ciorba

Scientific foundation models hold great promise for advancing nuclear and particle physics by improving analysis precision and accelerating discovery. Yet, progress in this field is often limited by the lack of openly available large scale…

Data Analysis, Statistics and Probability · Physics 2025-09-09 Shuhang Li , Yi Huang , David Park , Xihaier Luo , Haiwang Yu , Yeonju Go , Christopher Pinkenburg , Yuewei Lin , Shinjae Yoo , Joseph Osborn , Christof Roland , Jin Huang , Yihui Ren

In this article we expand and develop the authors' recent proposed methodology for efficient stochastic superparameterization (SP) algorithms for geophysical turbulence. Geophysical turbulence is characterized by significant intermittent…

Computational Physics · Physics 2013-10-08 Ian Grooms , Andrew J Majda

We present diffSPH, a novel open-source differentiable Smoothed Particle Hydrodynamics (SPH) framework developed entirely in PyTorch with GPU acceleration. diffSPH is designed centrally around differentiation to facilitate optimization and…

Fluid Dynamics · Physics 2025-07-30 Rene Winchenbach , Nils Thuerey

We consider big spatial data, which is typically produced in scientific areas such as geological or seismic interpretation. The spatial data can be produced by observation (e.g. using sensors or soil instrument) or numerical simulation…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-05-09 Ji Liu , Noel Moreno Lemus , Esther Pacitti , Fabio Porto , Patrick Valduriez

We present a new algorithm for simulating two-fluid gas and dust mixtures in Smoothed Particle Hydrodynamics (SPH), systematically addressing a number of key issues including the generalised SPH density estimate in multi-fluid systems, the…

Instrumentation and Methods for Astrophysics · Physics 2015-06-03 Guillaume Laibe , Daniel J. Price

In the recent years we have performed various experiments on the collision dynamics of highly porous dust aggregates and although we now have a comprehensive picture of the micromechanics of those aggregates, the macroscopic understanding…

Earth and Planetary Astrophysics · Physics 2015-05-13 Carsten Güttler , Maya Krause , Ralf J. Geretshauser , Roland Speith , Jürgen Blum

We present a largely improved version of CRASH, a 3-D radiative transfer code that treats the effects of ionizing radiation propagating through a given inhomogeneous H/He cosmological density field, on the physical conditions of the gas.…

Astrophysics · Physics 2009-11-10 A. Maselli , A. Ferrara , B. Ciardi

We present recent developments in the parallelization scheme of ECHO-3DHPC, an efficient astrophysical code used in the modelling of relativistic plasmas. With the help of the Intel Software Development Tools, like Fortran compiler and…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-10-11 Matteo Bugli , Luigi Iapichino , Fabio Baruffa