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Collections of cells exhibit coherent migration during morphogenesis, cancer metastasis, and wound healing. In many cases, bigger clusters split, smaller sub-clusters collide and reassemble, and gaps continually emerge. The connections…

Biological Physics · Physics 2021-03-31 Ushasi Roy , Andrew Mugler

We examine microscopic mechanisms for coupling stochastic oscillators so that they display similar and correlated temporal variations. Unlike oscillatory motion in deterministic dynamical systems, complete synchronization of stochastic…

Quantitative Methods · Quantitative Biology 2009-09-29 Amitabha Nandi , G. Santhosh , R. K. Brojen Singh , Ram Ramaswamy

The behaviors of coupled chaotic oscillators before complete synchronization were investigated. We report three phenomena: (1) The emergence of long-time residence of trajectories besides one of the saddle foci; (2) The tendency that orbits…

Chaotic Dynamics · Physics 2009-11-11 Bin Ao , Zhigang Zheng

A mode-coupling theory for dense polymeric systems is developed which unifyingly incorporates the segmental cage effect relevant for structural slowing down and polymer chain conformational degrees of freedom. An ideal glass transition of…

Soft Condensed Matter · Physics 2009-11-07 S. -H. Chong , M. Fuchs

We consider networks of coupled stochastic oscillators. When coupled we find strong collective oscillations, while each unit remains stochastic. In the limit (N\to \infty) we derive a system of integro-delay equations and show analytically…

Statistical Mechanics · Physics 2007-05-23 B. Naundorf , T. Prager , L. Schimansky-Geier

A system of active colloidal particles driven by harmonic potentials to oscillate about the vertices of a regular polygon, with hydrodynamic coupling between all particles, is described by a piece-wise linear model which exhibits various…

Statistical Mechanics · Physics 2013-05-30 Giovanni M. Cicuta , Enrico Onofri , Marco Cosentino Lagomarsino , Pietro Cicuta

We introduce the simplest model to describe parametric interactions in a quadratically nonlinear optical medium with the fundamental harmonic containing two components with (slightly) different carrier frequencies [which is a direct analog…

Pattern Formation and Solitons · Physics 2009-11-07 I. N. Towers , B. A. Malomed

The Cellular Potts Model (CPM) has been used for simulating various biological phenomena such as differential adhesion, fruiting body formation of the slime mold Dictyostelium discoideum, angiogenesis, cancer invasion, chondrogenesis in…

Biological Physics · Physics 2009-11-11 Mark Alber , Nan Chen , Tilmann Glimm , Pavel M. Lushnikov

Collective motion of cells is common in many physiological processes, including tissue development, repair, and tumor formation. Recent experiments have shown that certain malignant cancer cells form clusters in a chemoattractant gradient,…

Biological Physics · Physics 2017-05-02 Katherine Copenhagen , Gema Malet-Engra , Weimiao Yu , Giorgio Scita , Nir Gov , Ajay Gopinathan

We make a short review about the synchronization in coupled phase oscillator models. Next, we study the common-noise-induced synchronization among active rotators. At an intermediate noise strength, the noise-induced synchronization takes…

Adaptation and Self-Organizing Systems · Physics 2015-05-13 Hidetsugu Sakaguchi

Chemotaxis describes the intricate interplay of cellular motion in response to a chemical signal. We here consider the case of slab geometry which models chemotactic motion between two infinite membranes. Like previous works, we are…

Analysis of PDEs · Mathematics 2026-01-16 Herbert Egger , Kathrin Hellmuth , Nora Philippi , Matthias Schlottbom

Coupled oscillator networks often display transitions between qualitatively different phase-locked solutions -- such as synchrony and rotating wave solutions -- following perturbation or parameter variation. In the limit of weak coupling,…

Dynamical Systems · Mathematics 2025-10-10 Jorge L. Ocampo-Espindola , István Z. Kiss , Christian Bick , Kyle C. A. Wedgwood

We analyze the physical mechanisms leading either to synchronization or to the formation of spatio-temporal patterns in a lattice model of pulse-coupled oscillators. In order to make the system tractable from a mathematical point of view we…

Statistical Mechanics · Physics 2009-10-30 Albert Diaz-Guilera , Conrad J. Perez , Alex Arenas

Optimization of mutual synchronization between a pair of limit-cycle oscillators with weak symmetric coupling is considered in the framework of the phase reduction theory. By generalizing a previous study on the optimization of…

Adaptation and Self-Organizing Systems · Physics 2019-10-09 Nobuhiro Watanabe , Yuzuru Kato , Sho Shirasaka , Hiroya Nakao

We extend the model of exciton-plasmon materials to include a ro-vibrational structure of molecules using wave-packet propagations on electronic potential energy surfaces. The new model replaces conventional two-level emitters with more…

Mesoscale and Nanoscale Physics · Physics 2017-08-18 Maxim Sukharev , Eric Charron

In many biological systems localized mechanical information is transmitted by mechanically neutral chemical signals. Typical examples include contraction waves in acto-myosin cortex at cellular scale and peristaltic waves at tissue level.…

Soft Condensed Matter · Physics 2025-11-25 Lev Truskinovsky , Giuseppe Zurlo

We study the mobility of a charged colloidal particle in a constant homogeneous electric field by means of computer simulations. The simulation method combines a lattice Boltzmann scheme for the fluid with standard Langevin dynamics for the…

Soft Condensed Matter · Physics 2007-06-20 Vladimir Lobaskin , Burkhard Duenweg , Christian Holm

We study the effect of chemotactic signaling among mesenchymal cells. We show that the particular physiology of the mesenchymal cells allows one-dimensional collapse in contrast to the case of bacteria, and that the mesenchymal…

Cell Behavior · Quantitative Biology 2009-11-10 Carlos Escudero

Complex biological processes involve collective behavior of entities (bacteria, cells, animals) over many length and time scales and can be described by discrete models that track individuals or by continuum models involving densities and…

Soft Condensed Matter · Physics 2023-11-16 F. Terragni , W. D. Martinson , M. Carretero , P. K. Maini , L. L. Bonilla

The condensation transition, leading to complete mutual synchronization in large populations of globally coupled chaotic Roessler oscillators, is investigated. Statistical properties of this transition and the cluster structure of partially…

adap-org · Physics 2009-10-30 D. H. Zanette , A. S. Mikhailov
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