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The temporal behaviour of segmentation clock oscillations show phase synchrony via mean field like coupling of delta protein restricting to nearest neighbours only, in a configuration of cells arranged in a regular three dimensional array.…

Macroscopic ensembles of radiating dipoles are ubiquitous in the physical and natural sciences. In the classical limit the dipoles can be described as damped-driven oscillators, which are able to spontaneously synchronize and collectively…

Coarse-grained, mesoscale simulations are invaluable for studying soft condensed matter because of their ability to model systems in which a background solvent plays a significant role but is not the primary interest. Such methods generally…

Soft Condensed Matter · Physics 2024-03-19 Timofey Kozhukhov , Tyler N. Shendruk

We present a simple model that describes the motion of a single chemotactic cell exposed to a traveling wave of the chemoattractant. The model incorporates two types of responses to stimulation by the chemoattractant, i.e., change in…

Biological Physics · Physics 2011-10-26 Masatomo Iwasa , Ryosuke Ishiwata

Partial synchronous states appear between full synchrony and asynchrony and exhibit many interesting properties. Most frequently, these states are studied within the framework of phase approximation. The latter is used ubiquitously to…

Chaotic Dynamics · Physics 2021-06-30 Erik Teichmann

A family of stochastic processes has quasi-cycle oscillations if the oscillations are sustained by noise. For such a family we define a Kuramoto-type coupling of both phase and amplitude processes. We find that synchronization, as measured…

Dynamical Systems · Mathematics 2015-11-30 Priscilla E. Greenwood , Lawrence M. Ward

In this paper we use a continuous model to describe the development of a single cell lineage following the committal of stem cells. Three separate controls are implemented in the model, namely the proliferative control of stem cells, the…

Tissues and Organs · Quantitative Biology 2007-05-23 Ivana Drobnjak , A. C. Fowler , Michael C. Mackey

Coupled phase oscillators model a variety of dynamical phenomena in nature and technological applications. Non-local coupling gives rise to chimera states which are characterized by a distinct part of phase-synchronized oscillators while…

Adaptation and Self-Organizing Systems · Physics 2015-03-17 Christian Bick , Erik A. Martens

We study a simple model of shear banding in which the flow-induced phase is destabilised by coupling between flow and microstructure (wormlike micellar length). By varying the strength of the instability and the applied shear rate, we find…

Soft Condensed Matter · Physics 2007-05-23 Suzanne Fielding , Peter Olmsted

The system of two $Q$-deformed oscillators coupled so that the total Hamiltonian has the su$_Q$(2) symmetry is proved to be equivalent, to lowest order approximation, to a system of two identical Morse oscillators coupled by the…

Quantum Physics · Physics 2009-10-30 Dennis Bonatsos , C. Daskaloyannis , P. Kolokotronis

We investigate phase transitions towards frequency entrainment in large, locally coupled networks of limit cycle oscillators. Specifically, we simulate two-dimensional lattices of pulse-coupled oscillators with random natural frequencies,…

Statistical Mechanics · Physics 2015-06-24 P. Ostborn , S. Aberg , G. Ohlen

Despite the several novel features arising from the dissipative optomechanical coupling, such effect remains vastly unexplored due to the lack of a simple formalism that captures non-Hermiticity in optomechanical systems. In this Letter, we…

The cytoskeleton is an inhomogeneous network of semi-flexible filaments, which are involved in a wide variety of active biological processes. Although the cytoskeletal filaments can be very stiff and embedded in a dense and cross-linked…

Biological Physics · Physics 2019-05-24 Ines Weber , Cécile Appert-Rolland , Grégory Schehr , Ludger Santen

The so-called Filament Based Lamellipodium Model is a complex modeling framework for a very heterogeneous chemo-mechanical system of cell biology. It contains a model for Coulomb repulsion between filaments, whose effect on the stability of…

Dynamical Systems · Mathematics 2026-03-17 Gervy Marie Angeles , Jared Barber , Christian Schmeiser

The mechanism of phase synchronization between uncoupled limit-cycle oscillators induced by common external impulsive forcing is analyzed. By reducing the dynamics of the oscillator to a random phase map, it is shown that phase…

Adaptation and Self-Organizing Systems · Physics 2007-06-13 H. Nakao , K. Arai , K. Nagai , Y. Tsubo , Y. Kuramoto

We present a detailed study of the conduction properties of a molecular wire where hopping processes between electronic sites are coupled to a vibrational mode of the molecule. The latter is sandwiched between two electronic leads at finite…

Mesoscale and Nanoscale Physics · Physics 2017-05-24 Simon Pigeon , Lorenzo Fusco , Gabriele De Chiara , Mauro Paternostro

The control of complex systems and network-coupled dynamical systems is a topic of vital theoretical importance in mathematics and physics with a wide range of applications in engineering and various other sciences. Motivated by recent…

Adaptation and Self-Organizing Systems · Physics 2015-08-24 Per Sebastian Skardal , Alex Arenas

Collective oscillation of cells in a population has been reported under diverse biological contexts and with vastly different molecular constructs. Could there be common principles similar to those that govern spontaneous oscillation in…

Cell Behavior · Quantitative Biology 2019-07-08 Shou-Wen Wang , Lei-Han Tang

We discuss the mechanism and the conditions for the appearance of synchronized charge oscillations which have been observed experimentally and theoretically after strong photoexcitation of dimerized systems. In the Hubbard model with…

Strongly Correlated Electrons · Physics 2021-03-31 Kenji Yonemitsu , Philipp Werner

Many motile biological cells navigate along concentration gradients of signaling molecules: This chemotaxis guides for instance sperm cells from marine invertebrates, which have to find egg cells in the ocean. While chemotaxis has been…

Biological Physics · Physics 2022-09-21 Steffen Lange , Benjamin M. Friedrich
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