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The mutation-selection mechanism of Darwinian evolution gives rise not only to adaptation to environmental conditions but also to the enhancement of robustness against mutations. When two or more phenotypes have the same fitness value, the…

Populations and Evolution · Quantitative Biology 2024-11-20 Macoto Kikuchi

Automated medical report generation has demonstrated the potential to significantly reduce the workload associated with time-consuming medical reporting. Recent generative representation learning methods have shown promise in integrating…

Computer Vision and Pattern Recognition · Computer Science 2025-10-31 Shuchang Ye , Mingyuan Meng , Mingjian Li , Dagan Feng , Usman Naseem , Jinman Kim

During the initiation stage of protein synthesis, a ribosomal initiation complex (IC) is assembled on a messenger RNA (mRNA) template. In bacteria, the speed and accuracy of this assembly process are regulated by the complementary…

Biological Physics · Physics 2018-02-07 Dipanwita Ghanti , Kelvin Caban , Joachim Frank , Ruben L. Gonzalez, , Debashish Chowdhury

Recent developments in synthetic biology, next-generation sequencing, and machine learning provide an unprecedented opportunity to rationally design new disease treatments based on measured responses to gene perturbations and drugs to…

Molecular Networks · Quantitative Biology 2024-03-12 Thomas P. Wytock , Adilson E. Motter

Deep learning based single image super resolution (SISR) algorithms has revolutionized the overall diagnosis framework by continually improving the architectural components and training strategies associated with convolutional neural…

Image and Video Processing · Electrical Eng. & Systems 2022-03-15 Fayaz Ali Dharejo , Muhammad Zawish , Farah Deeba Yuanchun Zhou , Kapal Dev , Sunder Ali Khowaja , Nawab Muhammad Faseeh Qureshi

We present a simple yet effective approach to build multilingual speech-to-text (ST) translation by efficient transfer learning from pretrained speech encoder and text decoder. Our key finding is that a minimalistic LNA (LayerNorm and…

Computation and Language · Computer Science 2021-01-05 Xian Li , Changhan Wang , Yun Tang , Chau Tran , Yuqing Tang , Juan Pino , Alexei Baevski , Alexis Conneau , Michael Auli

Structural biology has long been dominated by the one sequence, one structure, one function paradigm, yet many critical biological processes - from enzyme catalysis to membrane transport - depend on proteins that adopt multiple…

Multimode fiber (MMF), due to its large core diameter and high mode capacity, holds potential in high-speed communications. However, inherent modal dispersion causes output speckle distortion, and transmission characteristics are sensitive…

Optics · Physics 2025-06-25 Yang Hu , Minyu Fan , Kun Liu , Songsong Zhu , Nan Jiang , Sha Wang

Motivated by single-particle cryo-electron microscopy, multi-reference alignment (MRA) models the task of recovering an unknown signal from multiple noisy observations corrupted by random rotations. The standard approach,…

Signal Processing · Electrical Eng. & Systems 2026-01-09 Shay Kreymer , Amnon Balanov , Tamir Bendory

Due to its excellent performance in rate and resolution, fully-digital (FD) massive multiple-input multiple-output (MIMO) antenna arrays has been widely applied in data transmission and direction of arrival (DOA) measurements, etc. But it…

Signal Processing · Electrical Eng. & Systems 2024-06-13 Jiatong Bai , Feng Shu , Qinghe Zheng , Bo Xu , Baihua Shi , Yiwen Chen , Weibin Zhang , Xianpeng Wang

Combinatorial designs provide an interesting source of optimization problems. Among them, permutation codes are particularly interesting given their applications in powerline communications, flash memories, and block ciphers. This paper…

Neural and Evolutionary Computing · Computer Science 2021-11-29 Luca Mariot , Stjepan Picek , Domagoj Jakobovic , Marko Djurasevic , Alberto Leporati

Token communication has emerged as a promising framework for efficient wireless transmission by representing source data as compact semantic tokens. However, transmitting full semantic tokens still incurs considerable communication…

Information Theory · Computer Science 2026-05-05 Weixuan Chen , Qianqian Yang

The mutation and selection of regulatory DNA sequences is presented as an ideal model system of molecular evolution where genotype, phenotype, and fitness can be explicitly and independently characterized. In this theoretical study, we…

Biological Physics · Physics 2007-05-23 Ulrich Gerland , Terence Hwa

Large reasoning models (LRMs) achieve strong performance through extended reasoning traces, but they often exhibit overthinking behavior for low-complexity queries. Existing efforts to mitigate this issue are fundamentally limited by…

Machine Learning · Computer Science 2026-02-27 Zihang Xu , Haozhi Xie , Ziqi Miao , Wuxuan Gong , Chen Qian , Lijun Li

RNA interference (RNAi) is a fundamental cellular process that inhibits gene expression through cleavage and destruction of target mRNA. It is responsible for a number of important intracellular functions, from being the first line of…

Quantitative Methods · Quantitative Biology 2017-07-12 G. Neofytou , Y. N. Kyrychko , K. B. Blyuss

Accurate RNA structure modeling remains difficult because RNA backbones are highly flexible, non-canonical interactions are prevalent, and experimentally determined 3D structures are comparatively scarce. We introduce \emph{RiboSphere}, a…

Machine Learning · Computer Science 2026-03-23 Zhou Zhang , Hanqun Cao , Cheng Tan , Fang Wu , Pheng Ann Heng , Tianfan Fu

Stochastic modeling of transcription is a classic yet long-standing problem in theoretical biophysics. The lack of unified results and a computationally efficient approach for a general, fine-grained transcription model has confined…

Biological Physics · Physics 2025-11-17 Yuntao Lu , Yunxin Zhang

Decoding speech from stereo-electroencephalography (sEEG) signals has emerged as a promising direction for brain-computer interfaces (BCIs). Its clinical applicability, however, is limited by the inherent non-stationarity of neural signals,…

Human-Computer Interaction · Computer Science 2025-09-30 Suli Wang , Yang-yang Li , Siqi Cai , Haizhou Li

Small Language Models (SLMs) enable cost-effective, on-device and latency-sensitive AI applications, yet their deployment in Traditional Chinese (TC) remains hindered by token-level instability - models unpredictably emit non-TC characters…

Computation and Language · Computer Science 2025-10-03 Yu-Cheng Chih , Ming-Tao Duan , Yong-Hao Hou

Generative adversarial networks (GANs) have been successfully used for considerable computer vision tasks, especially the image-to-image translation. However, generators in these networks are of complicated architectures with large number…

Computer Vision and Pattern Recognition · Computer Science 2019-07-26 Han Shu , Yunhe Wang , Xu Jia , Kai Han , Hanting Chen , Chunjing Xu , Qi Tian , Chang Xu
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