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Variations in Magnetic resonance imaging (MRI) scanners and acquisition protocols cause distribution shifts that degrade reconstruction performance on unseen data. Test-time adaptation (TTA) offers a promising solution to address this…

Image and Video Processing · Electrical Eng. & Systems 2025-07-15 Lipei Zhang , Rui Sun , Zhongying Deng , Yanqi Cheng , Carola-Bibiane Schönlieb , Angelica I Aviles-Rivero

Understanding how 5' untranslated regions (5'UTRs) regulate mRNA translation is critical for controlling protein expression and designing effective therapeutic mRNAs. While recent deep learning models have shown promise in predicting…

Quantitative Methods · Quantitative Biology 2026-02-27 Yuxi Lin , Yaxue Fang , Zehong Zhang , Zhouwu Liu , Siyun Zhong , Zhongfang Wang , Fulong Yu

The problem of RNA secondary structure design (also called inverse folding) is the following: given a target secondary structure, one aims to create a sequence that folds into, or is compatible with, a given structure. In several practical…

Quantitative Methods · Quantitative Biology 2013-08-02 Yu Zhou , Yann Ponty , Stéphane Vialette , Jérôme Waldispühl , Yi Zhang , Alain Denise

With the emergence of 6G, mobile networks are becoming increasingly heterogeneous and dynamic, necessitating advanced automation for efficient management. Intent-Driven Networks (IDNs) address this by translating high-level intents into…

Networking and Internet Architecture · Computer Science 2026-02-06 Md Arafat Habib , Medhat Elsayed , Yigit Ozcan , Pedro Enrique Iturria-Rivera , Majid Bavand , Melike Erol-Kantarci

Through adaptive antenna repositioning, the movable antenna (MA) technology enables on-demand reconfiguration of wireless channels, thereby creating an additional spatial degree of freedom in improving communication performance. This paper…

Information Theory · Computer Science 2026-04-23 Guojie Hu , Qingqing Wu , Lipeng Zhu , Kui Xu , Guoxin Li , Tong-Xing Zheng

We introduce a biologically detailed, stochastic model of gene expression describing the multiple rate-limiting steps of transcription, nuclear pre-mRNA processing, nuclear mRNA export, cytoplasmic mRNA degradation and translation of mRNA…

Molecular Networks · Quantitative Biology 2024-01-24 Muhan Ma , Juraj Szavits-Nossan , Abhyudai Singh , Ramon Grima

Down regulation of mRNA translation is an important problem in various bio-medical domains ranging from developing effective medicines for tumors and for viral diseases to developing attenuated virus strains that can be used for…

Genomics · Quantitative Biology 2016-06-29 Yoram Zarai , Michael Margaliot , Tamir Tuller

Messenger RNA (mRNA) plays a crucial role in protein synthesis, with its codon structure directly impacting biological properties. While Language Models (LMs) have shown promise in analyzing biological sequences, existing approaches fail to…

Machine Learning · Computer Science 2025-03-13 Mehdi Yazdani-Jahromi , Mangal Prakash , Tommaso Mansi , Artem Moskalev , Rui Liao

General-purpose large language models (LLMs) are increasingly deployed in verticals such as telecommunications, where adaptation is hindered by scarce, low-information-density corpora and tight mobile/edge constraints. We propose Data…

Machine Learning · Computer Science 2025-11-11 Zhicheng Zhou , Jing Li , Suming Qiu , Junjie Huang , Linyuan Qiu , Zhijie Sun

Large Language Models exhibit mode collapse, producing homogeneous outputs that fail to explore valid solution spaces. We present QD-LLM, a framework for parameter-efficient neuroevolution that evolves prompt embeddings, compact neural…

Neural and Evolutionary Computing · Computer Science 2026-05-12 Dongxin Guo , Jikun Wu , Siu Ming Yiu

Time-of-flight magnetic resonance angiography (TOF-MRA) is one of the most widely used non-contrast MR imaging methods to visualize blood vessels, but due to the 3-D volume acquisition highly accelerated acquisition is necessary.…

Image and Video Processing · Electrical Eng. & Systems 2020-08-05 Hyungjin Chung , Eunju Cha , Leonard Sunwoo , Jong Chul Ye

This paper presents an automated antenna design and optimization framework employing multi-objective genetic algorithms (MOGAs) to investigate various evolutionary optimization approaches, with a primary emphasis on multi-band frequency…

Neural and Evolutionary Computing · Computer Science 2026-01-27 Moahmed Hamza Boulaich , Said Ohamouddou , Mohammed Ali Ennasar , Abdelatif El Afia

Molecular communication (MC) offers a groundbreaking approach to communication inspired by biological signaling. It is particularly suited for environments where traditional electromagnetic methods fail, such as fluid mediums or within the…

Molecular Networks · Quantitative Biology 2025-03-18 Aravind Muraleedharan , Abhishek K. Gupta

Biological sequences encode fundamental instructions for the building blocks of life, in the form of DNA, RNA, and proteins. Modeling these sequences is key to understand disease mechanisms and is an active research area in computational…

This paper presents a systematic study on developing multi-template machine learning (ML) surrogate models and applying them to the inverse design of transformers (XFMRs) in radio-frequency integrated circuits (RFICs). Our study starts with…

Machine Learning · Computer Science 2025-12-01 Houbo He , Yizhou Xu , Lei Xia , Yaolong Hu , Fan Cai , Taiyun Chi

Purpose: Deep Neuroevolution (DNE) holds the promise of providing radiology artificial intelligence (AI) that performs well with small neural networks and small training sets. We seek to realize this potential via a proof-of-principle…

Neural and Evolutionary Computing · Computer Science 2021-12-28 Joseph N Stember , Hrithwik Shalu

Convolutional neural networks (CNNs) have constantly achieved better performance over years by introducing more complex topology, and enlarging the capacity towards deeper and wider CNNs. This makes the manual design of CNNs extremely…

Computer Vision and Pattern Recognition · Computer Science 2022-12-09 Bin Wang , Bing Xue , Mengjie Zhang

Large Language Models (LLMs) demand substantial computational resources, resulting in high energy consumption on GPUs. To address this challenge, we focus on Coarse-Grained Reconfigurable Arrays (CGRAs) as an effective alternative that…

Hardware Architecture · Computer Science 2025-12-02 Takuto Ando , Yu Eto , Ayumu Takeuchi , Yasuhiko Nakashima

Text-to-image generation aims at generating realistic images which are semantically consistent with the given text. Previous works mainly adopt the multi-stage architecture by stacking generator-discriminator pairs to engage multiple…

Computer Vision and Pattern Recognition · Computer Science 2024-01-23 Mengqi Huang , Zhendong Mao , Penghui Wang , Quan Wang , Yongdong Zhang

Messenger RNA-based medicines hold immense potential, as evidenced by their rapid deployment as COVID-19 vaccines. However, worldwide distribution of mRNA molecules has been limited by their thermostability, which is fundamentally limited…