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Knowledge graphs (KGs) are the cornerstone of the semantic web, offering up-to-date representations of real-world entities and relations. Yet large language models (LLMs) remain largely static after pre-training, causing their internal…

Computation and Language · Computer Science 2026-03-24 Songlin Zhai , Guilin Qi , Yue Wang , Yuan Meng

Large Language Models are now key assistants in human decision-making processes. However, a common note always seems to follow: "LLMs can make mistakes. Be careful with important info." This points to the reality that not all outputs from…

Computation and Language · Computer Science 2025-05-16 Longchao Da , Parth Mitesh Shah , Kuan-Ru Liou , Jiaxing Zhang , Hua Wei

Pursuing artificial intelligence for biomedical science, a.k.a. AI Scientist, draws increasing attention, where one common approach is to build a copilot agent driven by Large Language Models (LLMs). However, to evaluate such systems,…

Computation and Language · Computer Science 2024-07-02 Xinna Lin , Siqi Ma , Junjie Shan , Xiaojing Zhang , Shell Xu Hu , Tiannan Guo , Stan Z. Li , Kaicheng Yu

A scientific paper can be divided into two major constructs which are Metadata and Full-body text. Metadata provides a brief overview of the paper while the Full-body text contains key-insights that can be valuable to fellow researchers. To…

Digital Libraries · Computer Science 2023-08-28 Azanzi Jiomekong , Sanju Tiwari

Integrating structured knowledge from Knowledge Graphs (KGs) into Large Language Models (LLMs) remains a key challenge for symbolic reasoning. Existing methods mainly rely on prompt engineering or fine-tuning, which lose structural fidelity…

Machine Learning · Computer Science 2025-05-13 Erica Coppolillo

Due to the presence of the natural gap between Knowledge Graph (KG) structures and the natural language, the effective integration of holistic structural information of KGs with Large Language Models (LLMs) has emerged as a significant…

Computation and Language · Computer Science 2025-01-31 Qika Lin , Tianzhe Zhao , Kai He , Zhen Peng , Fangzhi Xu , Ling Huang , Jingying Ma , Mengling Feng

With the advent of high-throughput sequencing (HTS) in molecular biology and medicine, the need for scalable statistical solutions for modeling complex biological systems has become of critical importance. The increasing number of platforms…

Molecular Networks · Quantitative Biology 2022-10-19 Fernando Palluzzi , Mario Grassi

Adopting Knowledge Graphs (KGs) as a structured, semantic-oriented, data representation model has significantly improved data integration, reasoning, and querying capabilities across different domains. This is especially true in modern…

Information Retrieval · Computer Science 2026-01-19 Marco Arazzi , Davide Ligari , Serena Nicolazzo , Antonino Nocera

Although Large Language Models (LLMs) excel at addressing straightforward reasoning tasks, they frequently struggle with difficulties when confronted by more complex multi-step reasoning due to a range of factors. Firstly, natural language…

Computation and Language · Computer Science 2024-02-22 Kewei Cheng , Nesreen K. Ahmed , Theodore Willke , Yizhou Sun

Effective mental health counseling is a complex, theory-driven process requiring the simultaneous integration of psychological frameworks, real-time distress signals, and strategic intervention planning. This level of clinical reasoning is…

Computation and Language · Computer Science 2026-04-30 Eliya Naomi Aharon , Meytal Grimland , Avi Segal , Loona Ben Dayan , Inbar Shenfeld , Yossi Levi Belz , Kobi Gal

Large scale pretrained models have revolutionized Natural Language Processing (NLP) and Computer Vision (CV), showcasing remarkable cross domain generalization abilities. However, in graph learning, models are typically trained on…

Computation and Language · Computer Science 2025-10-03 Ruyue Liu , Rong Yin , Xiangzhen Bo , Xiaoshuai Hao , Yong Liu , Jinwen Zhong , Can Ma , Weiping Wang

Extensive research has investigated the integration of large language models (LLMs) with knowledge graphs to enhance the reasoning process. However, understanding how models perform reasoning utilizing structured graph knowledge remains…

Computation and Language · Computer Science 2025-02-24 Han Zhang , Langshi Zhou , Hanfang Yang

Conventional Knowledge Graph Completion (KGC) methods aim to infer missing information in incomplete Knowledge Graphs (KGs) by leveraging existing information, which struggle to perform effectively in scenarios involving emerging entities.…

Artificial Intelligence · Computer Science 2026-01-12 Jiapu Wang , Xinghe Cheng , Zezheng Wu , Ruiqi Ma , Rui Wang , Zhichao Yan , Haoran Luo , Yuhao Jiang , Kai Sun

Logical reasoning over incomplete knowledge graphs to answer complex logical queries is a challenging task. With the emergence of new entities and relations in constantly evolving KGs, inductive logical reasoning over KGs has become a…

Computation and Language · Computer Science 2023-05-24 Siyuan Wang , Zhongyu Wei , Meng Han , Zhihao Fan , Haijun Shan , Qi Zhang , Xuanjing Huang

Modern large language model-based reasoning systems frequently recompute similar reasoning steps across tasks, wasting computational resources, inflating inference latency, and limiting reproducibility. These inefficiencies underscore the…

Artificial Intelligence · Computer Science 2025-11-21 Yash Raj Singh

Large Language Models (LLMs) increasingly mediate access to scholarly information, yet their outputs are typically evaluated at the level of individual statements rather than knowledge structure. This paper introduces structural…

Social and Information Networks · Computer Science 2026-03-03 Moses Boudourides

Knowledge Graph Completion (KGC) aims at automatically predicting missing links for large-scale knowledge graphs. A vast number of state-of-the-art KGC techniques have got published at top conferences in several research fields, including…

Computation and Language · Computer Science 2020-07-10 Zhiqing Sun , Shikhar Vashishth , Soumya Sanyal , Partha Talukdar , Yiming Yang

Knowledge Graphs (KGs) bear great potential for ecology and biodiversity researchers in their ability to support synthesis and integration efforts, meta-analyses, reasoning tasks, and overall machine interoperability of research data.…

Databases · Computer Science 2026-01-05 Tarek Al Mustafa

Traditional methods of linking large language models (LLMs) to knowledge bases via the semantic similarity search often fall short of capturing complex relational dynamics. To address these limitations, we introduce AutoKG, a lightweight…

Computation and Language · Computer Science 2023-11-28 Bohan Chen , Andrea L. Bertozzi

Recent advances in Multimodal Large Language Models (MLLMs) have significantly enhanced their capabilities; however, their spatial perception abilities remain a notable limitation. To address this challenge, multimodal data synthesis offers…

Computation and Language · Computer Science 2025-11-25 Yida Xue , Zhen Bi , Jinnan Yang , Jungang Lou , Kehai Chen , Min Zhang , Huajun Chen , Ningyu Zhang