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Predicting the macroscopic properties of thin fiber-based porous materials from their microscopic morphology remains challenging because of the structural heterogeneity of these materials. In this study, computational fluid dynamics…

The topological properties of materials are, until now, associated with the features of their crystalline structure, although translational symmetry is not an explicit requirement of the topological phases. Recent studies of hopping models…

Geo-materials such as vuggy carbonates are known to exhibit multiple spatial scales. A common manifestation of spatial scales is the presence of (at least) two different scales of pores, which is commonly referred to as double porosity. To…

Fluid Dynamics · Physics 2018-03-07 K. B. Nakshatrala , S. H. S. Joodat , R. Ballarini

The Young's modulus of a two-dimensional truss-like structure is simulated by using the finite element method. A power-law expression is proposed for the effective Young's modulus of the system. The obtained numerical results are compared…

Soft Condensed Matter · Physics 2007-05-23 Enis Tuncer , Michael Wegener

A method is proposed for the characterisation of the entropy of cellular structures, based on the compactivity concept for granular packings. Hamiltonian-like volume functions are constructed both in two and in three dimensions, enabling…

Soft Condensed Matter · Physics 2009-11-11 Raphael Blumenfeld , Sam F. Edwards

The Bott index has become an indispensable tool to probe the topology of quantum matter, particularly in systems lacking translational symmetry. Constructed from a plaquette operator, it retains the phase information while discarding the…

Disordered Systems and Neural Networks · Physics 2026-04-07 Kaustav Chatterjee , Ronika Sarkar , Md Afsar Reja , Awadhesh Narayan

In this paper, we compared cancerous and normal cell according to their protein-protein interaction network. Cancer is one of the complicated diseases and experimental investigations have been showed that protein interactions have an…

Molecular Networks · Quantitative Biology 2019-03-19 Hossein A. Rahmani , AliReza Khanteymoori , Mohammad Olyaee

The Chern topological numbers of a material platform are usually written in terms of the Berry curvature, which depends on the normal modes of the system. Here, we use a gauge invariant Green's function method to determine from first…

Applied Physics · Physics 2020-03-04 Filipa R. Prudêncio , Mário G. Silveirinha

Describing the deviation of a real structure from a hypothetical higher-symmetry ideal can be a powerful tool to understand and interpret phase transitions. Here we introduce a simple yet effective metric that quantifies the degree of unit…

Materials Science · Physics 2025-08-05 Shannon Bernier , Gregory Bassen , Matthew Brem , Davor Tolj , Quentin Simmons , Tyrel M. McQueen

A contemporary procedure to grow artificial tissue is to seed cells onto a porous biomaterial scaffold and culture it within a perfusion bioreactor to facilitate the transport of nutrients to growing cells. Typical models of cell growth for…

Tissues and Organs · Quantitative Biology 2018-05-01 Andrew L. Krause , Dmitry Beliaev , Robert A. Van Gorder , Sarah L. Waters

Titanium surface treated with titanium oxide nanotubes was used in many studies to quantify the effect of surface topography on cell fate. However, the predicted optimal diameter of nanotubes considerably differs among studies. We propose a…

Cell Behavior · Quantitative Biology 2020-07-02 Matej Daniel , Kristina Eleršič Filipič , Eva Filová , Jaroslav Fojt

Tuning cell rearrangements is essential in collective cell movement that underlies cancer progression, wound repair, and embryonic development. A key question is how tissue material properties and morphology emerge from cellular factors…

Biological Physics · Physics 2025-07-15 Soumyadipta Ray , Santidan Biswas , Dipjyoti Das

The desire to image specimens in liquids has led to the development of open-cell and closed-cell techniques in transmission electron microscopy (TEM). The closed-cell approach is currently more common in TEM and has yielded new insights…

Applied Physics · Physics 2023-08-22 Barnaby D. A. Levin , Diane Haiber , Qianlang Liu , Peter A. Crozier

A multi-scale methodology is developed in conjunction with a probabilistic fatigue lifetime model for structures with pores whose exact distribution, i.e. geometries and locations, is unknown. The method takes into account uncertainty in…

Computational Engineering, Finance, and Science · Computer Science 2024-09-27 Abhishek Palchoudhary , Cristian Ovalle , Vincent Maurel , Pierre Kerfriden

Estimating the tortuosity of porous electrodes is important for understanding the performance of lithium-ion batteries and optimizing the design of electrode microstructures. In this work, a new method for estimating the tortuosity of…

Materials Science · Physics 2025-03-10 Zongli Chen , Chenzhe Li , Ying Zhao

We present experiments on the slow growth of a single crack in a fax paper sheet submitted to a constant force $F$. We find that statistically averaged crack growth curves can be described by only two parameters : the mean rupture time…

Biomolecular structure comparison not only reveals evolutionary relationships, but also sheds light on biological functional properties. However, traditional definitions of structure or sequence similarity always involve superposition or…

Quantitative Methods · Quantitative Biology 2017-07-13 Kelin Xia

Topology is the foundation for many industrial applications ranging from CAD to simulation analysis. Computational topology mostly focuses on structured data such as mesh, however unstructured dataset such as point set remains a virgin land…

Computational Geometry · Computer Science 2023-03-14 Hao Wang

In the past decade, photoemission orbital tomography (POT) has evolved into a powerful tool to investigate the electronic structure of organic molecules adsorbed on (metallic) surfaces. By measuring the angular distribution of…

Gas transport across cell membrane is a very important process in biochemistry which is essential for many crucial tasks, including cell respiration pH regulation in the cell. In the late 1990's, the suggestion that gasses are transported…

Numerical Analysis · Mathematics 2026-01-29 Alberto Bocchinfuso , Daniela Calvetti , Erkki Somersalo