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This paper presents a novel Natural Language Processing (NLP) framework for enhancing medical diagnosis through the integration of advanced techniques in data augmentation, feature extraction, and classification. The proposed approach…

Computation and Language · Computer Science 2025-02-12 Mohammad Ali Labbaf Khaniki , Sahabeh Saadati , Mohammad Manthouri

Biomedical named entity recognition (NER) is a high-utility natural language processing (NLP) task, and large language models (LLMs) show promise particularly in few-shot settings (i.e., limited training data). In this article, we address…

Computation and Language · Computer Science 2025-08-12 Yao Ge , Sudeshna Das , Yuting Guo , Abeed Sarker

The task of medical image recognition is notably complicated by the presence of varied and multiple pathological indications, presenting a unique challenge in multi-label classification with unseen labels. This complexity underlines the…

Computer Vision and Pattern Recognition · Computer Science 2024-09-16 Yaoqin Ye , Junjie Zhang , Hongwei Shi

Biomedical image segmentation is critical for precise structure delineation and downstream analysis. Traditional methods often struggle with noisy data, while deep learning models such as U-Net have set new benchmarks in segmentation…

Computer Vision and Pattern Recognition · Computer Science 2025-11-10 Shuo Zhao , Yu Zhou , Jianxu Chen

Medical image segmentation has immense clinical applicability but remains a challenge despite advancements in deep learning. The Segment Anything Model (SAM) exhibits potential in this field, yet the requirement for expertise intervention…

Computer Vision and Pattern Recognition · Computer Science 2023-11-14 Yinsong Xu , Jiaqi Tang , Aidong Men , Qingchao Chen

Large language models (LLMs) have demonstrated increasingly sophisticated performance in medical and other fields of knowledge. Traditional methods of creating specialist LLMs require extensive fine-tuning and training of models on large…

Computation and Language · Computer Science 2025-02-25 Sean Wu , Michael Koo , Fabien Scalzo , Ira Kurtz

This paper reports on the use of prompt engineering and GPT-3.5 for biomedical query-focused multi-document summarisation. Using GPT-3.5 and appropriate prompts, our system achieves top ROUGE-F1 results in the task of obtaining…

Computation and Language · Computer Science 2023-11-10 Diego Mollá

We present a scalable, AI-powered system that identifies and extracts evidence-based behavioral nudges from unstructured biomedical literature. Nudges are subtle, non-coercive interventions that influence behavior without limiting choice,…

In the expansion of biomedical dataset, the same category may be labeled with different terms, thus being tedious and onerous to curate these terms. Therefore, automatically mapping synonymous terms onto the ontologies is desirable, which…

Computation and Language · Computer Science 2023-11-29 Hanwen Xu , Jiayou Zhang , Zhirui Wang , Shizhuo Zhang , Megh Manoj Bhalerao , Yucong Liu , Dawei Zhu , Sheng Wang

Accurate nuclear instance segmentation is a pivotal task in computational pathology, supporting data-driven clinical insights and facilitating downstream translational applications. While large vision foundation models have shown promise…

Computer Vision and Pattern Recognition · Computer Science 2026-05-19 Wen Zhang , Qin Ren , Wenjing Liu , Haibin Ling , Chenyu You

Medical image segmentation of anatomical structures and pathology is crucial in modern clinical diagnosis, disease study, and treatment planning. To date, great progress has been made in deep learning-based segmentation techniques, but most…

Computer Vision and Pattern Recognition · Computer Science 2024-06-21 Taha Koleilat , Hojat Asgariandehkordi , Hassan Rivaz , Yiming Xiao

The growing demand for cognitive remediation therapy, combined with limited speech therapist availability, has accelerated the adoption of remote rehabilitation tools. These systems generate large volumes of interaction data that are…

Computation and Language · Computer Science 2026-05-08 Yongxin Zhou , Fabien Ringeval , François Portet

The rapid advancement of large language models (LLMs) in biological-medical applications has highlighted a gap between their potential and the limited scale and often low quality of available open-source annotated textual datasets. In…

Computation and Language · Computer Science 2025-12-19 Xunxin Cai , Chengrui Wang , Qingqing Long , Yuanchun Zhou , Meng Xiao

Developing effective prompts demands significant cognitive investment to generate reliable, high-quality responses from Large Language Models (LLMs). By deploying case-specific prompt engineering techniques that streamline frequently…

Computation and Language · Computer Science 2026-04-30 Valentin Romanov , Steven A Niederer

Medical retrieval-augmented generation (RAG) systems typically operate on text chunks extracted from biomedical literature, discarding the rich visual content (tables, figures, structured layouts) of original document pages. We propose…

Artificial Intelligence · Computer Science 2026-05-01 Xupeng Chen , Binbin Shi , Chenqian Le , Jiaqi Zhang , Kewen Wang , Ran Gong , Jinhan Zhang , Chihang Wang

Although the Segment Anything Model (SAM) is highly effective in natural image segmentation, it requires dependencies on prompts, which limits its applicability to medical imaging where manual prompts are often unavailable. Existing efforts…

Computer Vision and Pattern Recognition · Computer Science 2025-06-04 Mengmeng Zhang , Xingyuan Dai , Yicheng Sun , Jing Wang , Yueyang Yao , Xiaoyan Gong , Fuze Cong , Feiyue Wang , Yisheng Lv

Knowledge graphs and large language models (LLMs) are key tools for biomedical knowledge integration and reasoning, facilitating structured organization of scientific articles and discovery of complex semantic relationships. However,…

Computation and Language · Computer Science 2025-04-01 Yichun Feng , Jiawei Wang , Ruikun He , Lu Zhou , Yixue Li

Document parsing (DP) transforms unstructured or semi-structured documents into structured, machine-readable representations, enabling downstream applications such as knowledge base construction and retrieval-augmented generation (RAG).…

The automation of scientific research through large language models (LLMs) presents significant opportunities but faces critical challenges in knowledge synthesis and quality assurance. We introduce Feedback-Refined Agent Methodology…

Computation and Language · Computer Science 2025-11-18 Chengzhang Yu , Yiming Zhang , Zhixin Liu , Zenghui Ding , Yining Sun , Zhanpeng Jin

Multi-modal Retrieval-Augmented Generation (RAG) has become a critical method for empowering LLMs by leveraging candidate visual documents. However, current methods consider the entire document as the basic retrieval unit, introducing…

Computer Vision and Pattern Recognition · Computer Science 2025-12-23 Yinglu Li , Zhiying Lu , Zhihang Liu , Yiwei Sun , Chuanbin Liu , Hongtao Xie