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Functional MRI measuring BOLD signal is an increasingly important imaging modality in studying brain functions and neurological disorders. It can be acquired in either a resting-state or a task-based paradigm. Compared to resting-state…

Image and Video Processing · Electrical Eng. & Systems 2025-02-18 Jiyao Wang , Nicha C. Dvornek , Peiyu Duan , Lawrence H. Staib , James S. Duncan

Non-invasive brainwave decoding is usually done using Magneto/Electroencephalography (MEG/EEG) sensor measurements as inputs. This makes combining datasets and building models with inductive biases difficult as most datasets use different…

Signal Processing · Electrical Eng. & Systems 2024-10-29 Yonatan Gideoni , Ryan Charles Timms , Oiwi Parker Jones

Working memory (WM) is a mechanism that temporarily stores and manipulates information in service of behavioral goals and is a highly dynamic process. Previous studies have considered decoding WM load using EEG but have not investigated the…

Neurons and Cognition · Quantitative Biology 2019-10-15 Samuel Goldstein , Zhenhong Hu , Mingzhou Ding

In this work, we explore the decoding of mental imagery from subjects using their fMRI measurements. In order to achieve this decoding, we first created a mapping between a subject's fMRI signals elicited by the videos the subjects watched.…

Image and Video Processing · Electrical Eng. & Systems 2024-10-02 Arman Afrasiyabi , Erica Busch , Rahul Singh , Dhananjay Bhaskar , Laurent Caplette , Nicholas Turk-Browne , Smita Krishnaswamy

The objective of this paper is to provide a temporal dynamic model for resting state functional Magnetic Resonance Imaging (fMRI) trajectory to predict future brain images based on the given sequence. To this end, we came up with the model…

Signal Processing · Electrical Eng. & Systems 2020-11-17 Zheyu Wen

Autonomous driving systems require a comprehensive understanding of the environment, achieved by extracting visual features essential for perception, planning, and control. However, models trained solely on single-task objectives or generic…

Computer Vision and Pattern Recognition · Computer Science 2026-04-03 Huy-Dung Nguyen , Anass Bairouk , Mirjana Maras , Wei Xiao , Tsun-Hsuan Wang , Patrick Chareyre , Ramin Hasani , Marc Blanchon , Daniela Rus

With the wide adoption of functional magnetic resonance imaging (fMRI) by cognitive neuroscience researchers, large volumes of brain imaging data have been accumulated in recent years. Aggregating these data to derive scientific insights…

Applications · Statistics 2020-06-01 Ming Bo Cai , Michael Shvartsman , Anqi Wu , Hejia Zhang , Xia Zhu

We propose a decoding-based approach to detect context effects on neural codes in longitudinal neural recording data. The approach is agnostic to how information is encoded in neural activity, and can control for a variety of possible…

Machine Learning · Statistics 2022-11-18 Yenho Chen , Carl W. Harris , Xiaoyu Ma , Zheng Li , Francisco Pereira , Charles Y. Zheng

A major hurdle to clinical translation of brain-machine interfaces (BMIs) is that current decoders, which are trained from a small quantity of recent data, become ineffective when neural recording conditions subsequently change. We tested…

Neurons and Cognition · Quantitative Biology 2016-12-15 David Sussillo , Sergey D. Stavisky , Jonathan C. Kao , Stephen I. Ryu , Krishna V. Shenoy

We present a sequential transfer learning framework for transformers on functional Magnetic Resonance Imaging (fMRI) data and demonstrate its significant benefits for decoding musical timbre. In the first of two phases, we pre-train our…

Quantitative Methods · Quantitative Biology 2023-05-23 Sean Paulsen , Michael Casey

Brain decoding is a key neuroscience field that reconstructs the visual stimuli from brain activity with fMRI, which helps illuminate how the brain represents the world. fMRI-to-image reconstruction has achieved impressive progress by…

Neurons and Cognition · Quantitative Biology 2025-10-27 Guoying Sun , Weiyu Guo , Tong Shao , Yang Yang , Haijin Zeng , Jie Liu , Jingyong Su

Functional Magnetic Resonance Images acquired during resting-state provide information about the functional organization of the brain through measuring correlations between brain areas. Independent components analysis is the reference…

Neurons and Cognition · Quantitative Biology 2014-12-15 Alexandre Abraham , Elvis Dohmatob , Bertrand Thirion , Dimitris Samaras , Gael Varoquaux

To study information processing in the brain, neuroscientists manipulate experimental stimuli while recording participant brain activity. They can then use encoding models to find out which brain "zone" (e.g. which region of interest,…

Neurons and Cognition · Quantitative Biology 2022-02-22 Mariya Toneva , Jennifer Williams , Anand Bollu , Christoph Dann , Leila Wehbe

Generative AI has recently propelled the decoding of images from brain activity. How do these approaches scale with the amount and type of neural recordings? Here, we systematically compare image decoding from four types of non-invasive…

Image and Video Processing · Electrical Eng. & Systems 2025-01-29 Hubert Banville , Yohann Benchetrit , Stéphane d'Ascoli , Jérémy Rapin , Jean-Rémi King

The increasing popularity of naturalistic paradigms in fMRI (such as movie watching) demands novel strategies for multi-subject data analysis, such as use of neural encoding models. In the present study, we propose a shared convolutional…

Neurons and Cognition · Quantitative Biology 2020-07-14 Meenakshi Khosla , Gia H. Ngo , Keith Jamison , Amy Kuceyeski , Mert R. Sabuncu

Simultaneous EEG-fMRI is a multi-modal neuroimaging technique that provides complementary spatial and temporal resolution for inferring a latent source space of neural activity. In this paper we address this inference problem within the…

Machine Learning · Computer Science 2020-10-06 Xueqing Liu , Linbi Hong , Paul Sajda

Learning maps between function spaces with a strong inductive bias is a central challenge in soft computing, especially when training data are scarce and standard deep architectures overfit. We introduce a \emph{neural integral operator}…

Machine Learning · Computer Science 2026-05-26 Emanuele Zappala , Alice Giola , Andreas Kramer , Saugat Acharya , Enrico Greco

Supervised Deep-Learning (DL)-based reconstruction algorithms have shown state-of-the-art results for highly-undersampled dynamic Magnetic Resonance Imaging (MRI) reconstruction. However, the requirement of excessive high-quality…

Image and Video Processing · Electrical Eng. & Systems 2025-11-11 Jie Feng , Ruimin Feng , Qing Wu , Zhiyong Zhang , Yuyao Zhang , Hongjiang Wei

We introduce a new way of learning to encode position information for non-recurrent models, such as Transformer models. Unlike RNN and LSTM, which contain inductive bias by loading the input tokens sequentially, non-recurrent models are…

Machine Learning · Computer Science 2020-03-23 Xuanqing Liu , Hsiang-Fu Yu , Inderjit Dhillon , Cho-Jui Hsieh

Studies of functional MRI data are increasingly concerned with the estimation of differences in spatio-temporal networks across groups of subjects or experimental conditions. Unsupervised clustering and independent component analysis (ICA)…