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The brain structural connectome is generated by a collection of white matter fiber bundles constructed from diffusion weighted MRI (dMRI), acting as highways for neural activity. There has been abundant interest in studying how the…

Methodology · Statistics 2022-11-03 Didong Li , Phuc Nguyen , Zhengwu Zhang , David B Dunson

Conformal surface parameterization is useful in graphics, imaging and visualization, with applications to texture mapping, atlas construction, registration, remeshing and so on. With the increasing capability in scanning and storing data,…

Computational Geometry · Computer Science 2020-07-06 Gary P. T. Choi , Yusan Leung-Liu , Xianfeng Gu , Lok Ming Lui

Diffusion MRI tractography is an advanced imaging technique that enables in vivo mapping of the brain's white matter connections. White matter parcellation classifies tractography streamlines into clusters or anatomically meaningful tracts.…

Image and Video Processing · Electrical Eng. & Systems 2023-01-25 Tengfei Xue , Fan Zhang , Chaoyi Zhang , Yuqian Chen , Yang Song , Alexandra J. Golby , Nikos Makris , Yogesh Rathi , Weidong Cai , Lauren J. O'Donnell

Dense point tracking is a fundamental problem in computer vision, with applications ranging from video analysis to robotic manipulation. State-of-the-art trackers typically rely on cost volumes to match features across frames, but this…

Computer Vision and Pattern Recognition · Computer Science 2026-02-05 Zihang Lai , Eldar Insafutdinov , Edgar Sucar , Andrea Vedaldi

Recent successes in deep learning based deformable image registration (DIR) methods have demonstrated that complex deformation can be learnt directly from data while reducing computation time when compared to traditional methods. However,…

Computer Vision and Pattern Recognition · Computer Science 2019-08-20 Sharib Ali , Jens Rittscher

A surface-based diffeomorphic algorithm to generate 3D coordinate grids in the cortical ribbon is described. In the grid, normal coordinate lines are generated by the diffeomorphic evolution from the grey/white (inner) surface to the…

Computer Vision and Pattern Recognition · Computer Science 2019-07-16 J. Tilak Ratnanather , Sylvain Arguillère , Kwame S. Kutten , Peter Hubka , Andrej Kral , Laurent Younes

3D face registration is an important process in which a 3D face model is aligned and mapped to a template face. However, the task of 3D face registration becomes particularly challenging when dealing with partial face data, where only…

Computer Vision and Pattern Recognition · Computer Science 2024-05-17 Yuchen Guo , Hanqun Cao , Lok Ming Lui

Registration, which aims to find an optimal 1-1 correspondence between shapes, is an important process in different research areas. Conformal mappings have been widely used to obtain a diffeomorphism between shapes that minimizes angular…

Computational Geometry · Computer Science 2012-11-13 Lok Ming Lui , Ka Chun Lam , Shing-Tung Yau , Xianfeng Gu

Diffusion MRI (dMRI) plays a crucial role in studying brain white matter connectivity. Cortical surface reconstruction (CSR), including the inner whiter matter (WM) and outer pial surfaces, is one of the key tasks in dMRI analyses such as…

Tissues and Organs · Quantitative Biology 2025-03-07 Chengjin Li , Yuqian Chen , Nir A. Sochen , Wei Zhang , Carl-Fredrik Westin , Rathi Yogesh , Lauren J. O'Donnell , Ofer Pasternak , Fan Zhang

Deformable image registration can obtain dynamic information about images, which is of great significance in medical image analysis. The unsupervised deep learning registration method can quickly achieve high registration accuracy without…

Computer Vision and Pattern Recognition · Computer Science 2022-07-19 Xiao Fan , Shuxin Zhuang , Zhemin Zhuang , Ye Yuan , Shunmin Qiu , Alex Noel Joseph Raj , Yibiao Rong

Tract-specific diffusion measures, as derived from brain diffusion MRI, have been linked to white matter tract structural integrity and neurodegeneration. As a consequence, there is a large interest in the automatic segmentation of white…

Image and Video Processing · Electrical Eng. & Systems 2019-08-28 Bo Li , Marius de Groot , Meike Vernooij , Arfan Ikram , Wiro Niessen , Esther Bron

Tractography fiber clustering using diffusion MRI (dMRI) is a crucial method for white matter (WM) parcellation to enable analysis of brains structural connectivity in health and disease. Current fiber clustering strategies primarily use…

Image and Video Processing · Electrical Eng. & Systems 2025-11-04 Bocheng Guo , Jin Wang , Yijie Li , Junyi Wang , Mingyu Gao , Puming Feng , Yuqian Chen , Jarrett Rushmore , Nikos Makris , Yogesh Rathi , Lauren J O'Donnell , Fan Zhang

We present a continuous model for structural brain connectivity based on the Poisson point process. The model treats each streamline curve in a tractography as an observed event in connectome space, here a product space of cortical white…

Neurons and Cognition · Quantitative Biology 2018-11-07 Daniel Moyer , Boris A. Gutman , Joshua Faskowitz , Neda Jahanshad , Paul M. Thompson

We present a new paradigm for rigid alignment between point clouds based on learnable weighted consensus which is robust to noise as well as the full spectrum of the rotation group. Current models, learnable or axiomatic, work well for…

Computer Vision and Pattern Recognition · Computer Science 2021-05-07 Dvir Ginzburg , Dan Raviv

In this manuscript, we are concerned with data generated from a diffusion tensor imaging (DTI) experiment. The goal is to parameterize manifold-like white matter tracts, such as the corpus callosum, using principal surfaces. We approach the…

Diffusion Tensor Imaging (DTI) provides the possibility of estimating the location and course of eloquent structures in the human brain. Knowledge about this is of high importance for preoperative planning of neurosurgical interventions and…

Computer Vision and Pattern Recognition · Computer Science 2011-03-11 Miriam H. A. Bauer , Jan Egger , Daniela Kuhnt , Sebastiano Barbieri , Jan Klein , Horst K. Hahn , Bernd Freisleben , Christopher Nimsky

In this paper, we propose a learning-based framework for non-rigid shape registration without correspondence supervision. Traditional shape registration techniques typically rely on correspondences induced by extrinsic proximity, therefore…

Computer Vision and Pattern Recognition · Computer Science 2023-11-09 Puhua Jiang , Mingze Sun , Ruqi Huang

Many genus-0 surface mapping tasks such as landmark alignment, feature matching, and image-driven registration, can be reduced (via an initial spherical conformal map) to optimizing a spherical self-homeomorphism with controlled distortion.…

Graphics · Computer Science 2026-02-05 Zhehao Xu , Lok Ming Lui

Tree-like structures such as retinal images are widely studied in computer-aided diagnosis systems for large-scale screening programs. Despite several segmentation and tracking methods proposed in the literature, there still exist several…

Computer Vision and Pattern Recognition · Computer Science 2017-06-27 Samaneh Abbasi-Sureshjani , Marta Favali , Giovanna Citti , Alessandro Sarti , Bart M. ter Haar Romeny

The white matter of the brain is organised into axonal bundles that support long-range neural communication. Although diffusion MRI (dMRI) enables detailed mapping of these pathways through tractography, how white matter pathways directly…

Neurons and Cognition · Quantitative Biology 2026-02-24 Yifei Sun , James M. Shine , Robert D. Sanders , Robin F. H. Cash , Sharon L. Naismith , Fernando Calamante , Jinglei Lv