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Popular technologies for generating spatially resolved transcriptomic data measure gene expression at the resolution of a "spot", i.e., a small tissue region 55 microns in diameter. Each spot can contain many cells of different types. In…

Applications · Statistics 2025-11-24 Hyun Jung Koo , Aaron J. Molstad

The pre-ranking stage plays a pivotal role in large-scale recommender systems but faces an intrinsic trade-off between model expressiveness and computational efficiency. Owing to the massive candidate pool and strict latency constraints,…

Information Retrieval · Computer Science 2025-10-29 Yutian Xiao , Meng Yuan , Fuzhen Zhuang , Wei Chen , Shukuan Wang , Shanqi Liu , Chao Feng , Wenhui Yu , Xiang Li , Lantao Hu , Han Li , Zhao Zhang

Real-world object detection systems, such as those in autonomous driving and surveillance, must continuously learn new object categories and simultaneously adapt to changing environmental conditions. Existing approaches, Class Incremental…

Computer Vision and Pattern Recognition · Computer Science 2025-08-05 Munish Monga , Vishal Chudasama , Pankaj Wasnik , Biplab Banerjee

In this work, we introduce DUET (Dual-model Efficient Two-stage inference), a collaborative inference framework in which a capable model and a lightweight model work together to solve a task. Relying on a single large model to perform…

Machine Learning · Computer Science 2026-05-05 Yilei Chen , Sharut Gupta , Yannis Paschalidis , Ayush Sekhari , Aldo Pacchiano

Multiview Self-Supervised Learning (MSSL) is based on learning invariances with respect to a set of input transformations. However, invariance partially or totally removes transformation-related information from the representations, which…

Machine Learning · Computer Science 2023-11-20 Xavier Suau , Federico Danieli , T. Anderson Keller , Arno Blaas , Chen Huang , Jason Ramapuram , Dan Busbridge , Luca Zappella

Zero-shot learning (ZSL) aims to predict unseen classes whose samples have never appeared during training. One of the most effective and widely used semantic information for zero-shot image classification are attributes which are…

Computer Vision and Pattern Recognition · Computer Science 2023-02-17 Zhuo Chen , Yufeng Huang , Jiaoyan Chen , Yuxia Geng , Wen Zhang , Yin Fang , Jeff Z. Pan , Huajun Chen

Spatial transcriptomics (ST) is an emerging technology that enables researchers to investigate the molecular relationships underlying tissue morphology. However, acquiring ST data remains prohibitively expensive, and traditional fixed-grid…

Computer Vision and Pattern Recognition · Computer Science 2026-02-03 Junchao Zhu , Ruining Deng , Junlin Guo , Tianyuan Yao , Chongyu Qu , Juming Xiong , Siqi Lu , Zhengyi Lu , Yanfan Zhu , Marilyn Lionts , Yuechen Yang , Yalin Zheng , Yu Wang , Shilin Zhao , Haichun Yang , Yuankai Huo

Domain-Incremental Learning (DIL) involves the progressive adaptation of a model to new concepts across different domains. While recent advances in pre-trained models provide a solid foundation for DIL, learning new concepts often results…

Computer Vision and Pattern Recognition · Computer Science 2025-03-05 Da-Wei Zhou , Zi-Wen Cai , Han-Jia Ye , Lijun Zhang , De-Chuan Zhan

Spatial Transcriptomics (ST) merges the benefits of pathology images and gene expression, linking molecular profiles with tissue structure to analyze spot-level function comprehensively. Predicting gene expression from histology images is a…

Computer Vision and Pattern Recognition · Computer Science 2025-12-01 Chen Zhang , Yilu An , Ying Chen , Hao Li , Xitong Ling , Lihao Liu , Junjun He , Yuxiang Lin , Zihui Wang , Rongshan Yu

Spatial transcriptomics (ST) maps gene expression within tissue at individual spots, making it a valuable resource for multimodal representation learning. Additionally, ST inherently contains rich hierarchical information both across and…

Computer Vision and Pattern Recognition · Computer Science 2025-03-04 Xulin Chen , Junzhou Huang

Spatial transcriptomics (ST) provides essential spatial context by mapping gene expression within tissue, enabling detailed study of cellular heterogeneity and tissue organization. However, aligning ST data with histology images poses…

Pathology foundation models learn morphological representations through self-supervised pretraining on large-scale whole-slide images, yet they do not explicitly capture the underlying molecular state of the tissue. Spatial transcriptomics…

Computer Vision and Pattern Recognition · Computer Science 2026-03-10 Minsoo Lee , Jonghyun Kim , Juseung Yun , Sunwoo Yu , Jongseong Jang

Spatial transcriptomics (ST) provides crucial insights into tissue micro-environments, but is limited to its high cost and complexity. As an alternative, predicting gene expression from pathology whole slide images (WSI) is gaining…

Computer Vision and Pattern Recognition · Computer Science 2025-07-01 Mingcheng Qu , Yuncong Wu , Donglin Di , Yue Gao , Tonghua Su , Yang Song , Lei Fan

The development of single-cell and spatial transcriptomics has revolutionized our capacity to investigate cellular properties, functions, and interactions in both cellular and spatial contexts. However, the analysis of single-cell and…

Genomics · Quantitative Biology 2024-12-09 Shuang Ge , Shuqing Sun , Huan Xu , Qiang Cheng , Zhixiang Ren

Spatial Transcriptomics (ST) is a technology that measures gene expression profiles within tissue sections while retaining spatial context. It reveals localized gene expression patterns and tissue heterogeneity, both of which are essential…

Quantitative Methods · Quantitative Biology 2026-03-24 Wei Zhang , Jiajun Chu , Xinci Liu , Chen Tong , Xinyue Li

The performance of an LLM depends heavily on the relevance of its training data to the downstream evaluation task. However, in practice, the data involved in an unseen evaluation task is often unknown (e.g., conversations between an LLM and…

Machine Learning · Computer Science 2026-05-15 Zhiliang Chen , Gregory Kang Ruey Lau , Chuan-Sheng Foo , Bryan Kian Hsiang Low

Single-cell spatial transcriptomics (ST) offers a unique approach to measuring gene expression profiles and spatial cell locations simultaneously. However, most existing ST methods assume that cells in closer spatial proximity exhibit more…

Genomics · Quantitative Biology 2025-06-10 Xiongtao Xiao , Xiaofeng Chen , Feiyan Jiang , Songming Zhang , Wenming Cao , Cheng Tan , Zhangyang Gao , Zhongshan Li

Prompt tuning methods have achieved remarkable success in parameter-efficient fine-tuning on large pre-trained models. However, their application to dual-modal fusion-based visual-language pre-trained models (VLPMs), such as GLIP, has…

Computer Vision and Pattern Recognition · Computer Science 2024-07-17 Yang Zhou , Yongjian Wu , Jiya Saiyin , Bingzheng Wei , Maode Lai , Eric Chang , Yan Xu

Spatial transcriptomics (ST) reveals spatial heterogeneity of gene expression, yet its resolution is limited by current platforms. Recent methods enhance resolution via H&E-stained histology, but three major challenges persist: (1)…

Image and Video Processing · Electrical Eng. & Systems 2025-08-12 Xuepeng Liu , Zheng Jiang , Pinan Zhu , Hanyu Liu , Chao Li

Spatial transcriptomics (ST) provides spatially resolved measurements of gene expression, enabling characterization of the molecular landscape of human tissue beyond histological assessment as well as localized readouts that can be aligned…

Computer Vision and Pattern Recognition · Computer Science 2026-02-17 Konstantin Hemker , Andrew H. Song , Cristina Almagro-Pérez , Guillaume Jaume , Sophia J. Wagner , Anurag Vaidya , Nikola Simidjievski , Mateja Jamnik , Faisal Mahmood
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